Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78335 | Canola | nucleus | 66.53 | 89.2 |
| CDX81094 | Canola | nucleus | 67.8 | 88.89 |
| CDY40752 | Canola | cytosol | 65.68 | 87.57 |
| CDY44770 | Canola | cytosol | 83.47 | 87.56 |
| CDX87179 | Canola | nucleus | 65.68 | 72.09 |
| CDY16842 | Canola | nucleus | 65.68 | 72.09 |
| CDY45760 | Canola | nucleus | 66.53 | 64.88 |
| CDY46951 | Canola | nucleus | 62.29 | 63.91 |
| AT5G23280.1 | Thale cress | nucleus | 67.37 | 63.6 |
| CDY40799 | Canola | nucleus | 61.86 | 63.48 |
| CDX88010 | Canola | nucleus | 67.37 | 62.85 |
| Os03t0422702-00 | Rice | cytosol, plastid | 31.36 | 58.73 |
| VIT_10s0042g00170.t01 | Wine grape | nucleus | 63.14 | 58.43 |
| Zm00001d018530_P001 | Maize | plastid | 48.31 | 55.07 |
| Os02t0828566-01 | Rice | nucleus | 52.97 | 52.97 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 54.66 | 52.87 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 43.22 | 51.52 |
| TraesCS6D01G397000.1 | Wheat | mitochondrion | 42.8 | 51.27 |
| EES07800 | Sorghum | plastid | 52.54 | 51.03 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 42.8 | 51.01 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 52.97 | 46.82 |
| CDY36943 | Canola | nucleus | 27.54 | 34.39 |
| CDY60249 | Canola | cytosol | 25.42 | 28.85 |
| CDX72856 | Canola | nucleus | 39.41 | 27.84 |
| CDX96370 | Canola | nucleus | 39.41 | 27.76 |
| CDY48964 | Canola | nucleus | 25.0 | 26.82 |
| CDY24170 | Canola | nucleus | 27.54 | 26.75 |
| CDX95656 | Canola | nucleus | 31.78 | 25.6 |
| CDY28577 | Canola | cytosol | 26.27 | 25.51 |
| CDY03666 | Canola | nucleus, plastid | 38.14 | 25.35 |
| CDX82193 | Canola | nucleus, plastid | 37.71 | 25.28 |
| CDY27099 | Canola | nucleus | 29.66 | 25.09 |
| CDY53888 | Canola | nucleus | 33.05 | 25.08 |
| CDX91612 | Canola | nucleus | 29.66 | 24.31 |
| CDY20065 | Canola | cytosol | 27.54 | 24.16 |
| CDY00171 | Canola | nucleus | 27.97 | 23.91 |
| CDY28576 | Canola | nucleus | 32.2 | 23.9 |
| CDX74756 | Canola | nucleus | 32.2 | 23.38 |
| CDY68276 | Canola | nucleus, plastid | 31.78 | 23.36 |
| CDY52403 | Canola | nucleus | 30.08 | 23.28 |
| CDY01754 | Canola | nucleus, plastid | 31.78 | 23.22 |
| CDY18910 | Canola | nucleus | 31.78 | 23.08 |
| CDY13675 | Canola | nucleus | 30.08 | 22.83 |
| CDY71135 | Canola | nucleus | 34.75 | 20.92 |
| CDY39914 | Canola | nucleus, plastid | 34.32 | 20.56 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.3 | UniProt:A0A078G838 | EnsemblPlants:CDY21536 | ProteinID:CDY21536 | ProteinID:CDY21536.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00015984001 | InterPro:IPR017887 | PFAM:PF03634 |
| PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF73 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EEE9D4 |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g47560DBnaC09g47560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G838]
Coordinates
chrLK032122:+:143752..144746
Molecular Weight (calculated)
24751.8 Da
IEP (calculated)
7.817
GRAVY (calculated)
-0.485
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNDDGTVTN GAIVEHTSAA NKGTLNAVKK PPANDRHSKV DGRGRRIRMP VICAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA
101: SLSTSSPFTL GKRVVRAEEG ESGAGGGELS VGHTMGASGG GGFWAVPARN DFTQVWSFAA GAPPEMLFTQ QQQQPATLFV RHQQQQQQEA SAAAAMGEAS
201: AARVGNYLPG HHLNLLASLS GGNTGSGRRE EEDDSR
101: SLSTSSPFTL GKRVVRAEEG ESGAGGGELS VGHTMGASGG GGFWAVPARN DFTQVWSFAA GAPPEMLFTQ QQQQPATLFV RHQQQQQQEA SAAAAMGEAS
201: AARVGNYLPG HHLNLLASLS GGNTGSGRRE EEDDSR
001: MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
Arabidopsis Description
TCP21Transcription factor TCP21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FTA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.