Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025244.1-P | Field mustard | nucleus | 93.44 | 92.83 |
| CDY13675 | Canola | nucleus | 93.44 | 91.64 |
| AT3G27010.1 | Thale cress | nucleus | 82.62 | 80.25 |
| CDY20065 | Canola | cytosol | 67.21 | 76.21 |
| CDY00171 | Canola | nucleus | 67.54 | 74.64 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 55.41 | 57.09 |
| PGSC0003DMT400052203 | Potato | nucleus | 43.28 | 56.9 |
| PGSC0003DMT400090661 | Potato | nucleus | 47.21 | 51.61 |
| Solyc02g068200.1.1 | Tomato | nucleus | 45.9 | 51.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.7 | 50.66 |
| KRG94577 | Soybean | nucleus | 54.43 | 50.3 |
| KRH06910 | Soybean | nucleus | 55.41 | 48.99 |
| GSMUA_Achr11P... | Banana | nucleus | 37.38 | 45.78 |
| CDY36943 | Canola | nucleus | 23.93 | 38.62 |
| Zm00001d011985_P001 | Maize | nucleus | 39.02 | 37.78 |
| Os01t0924400-01 | Rice | nucleus | 38.69 | 37.22 |
| CDY60249 | Canola | cytosol | 25.25 | 37.02 |
| EES01992 | Sorghum | nucleus | 39.34 | 36.92 |
| CDY40752 | Canola | cytosol | 21.31 | 36.72 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 38.69 | 36.42 |
| CDX78335 | Canola | nucleus | 20.98 | 36.36 |
| CDX81094 | Canola | nucleus | 21.31 | 36.11 |
| CDY48964 | Canola | nucleus | 24.92 | 34.55 |
| TraesCS3D01G428700.1 | Wheat | nucleus | 38.03 | 34.52 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 38.03 | 34.02 |
| CDX87179 | Canola | nucleus | 23.93 | 33.95 |
| CDY16842 | Canola | nucleus | 23.93 | 33.95 |
| CDY24170 | Canola | nucleus | 26.89 | 33.74 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 38.03 | 33.24 |
| CDY44770 | Canola | cytosol | 23.61 | 32.0 |
| CDY46951 | Canola | nucleus | 23.61 | 31.3 |
| CDY40799 | Canola | nucleus | 22.95 | 30.43 |
| CDY21536 | Canola | nucleus | 23.28 | 30.08 |
| CDY45760 | Canola | nucleus | 23.61 | 29.75 |
| CDX88010 | Canola | nucleus | 23.93 | 28.85 |
| CDY28576 | Canola | nucleus | 29.84 | 28.62 |
| CDY01754 | Canola | nucleus, plastid | 30.16 | 28.48 |
| CDY68276 | Canola | nucleus, plastid | 29.84 | 28.35 |
| CDY27099 | Canola | nucleus | 24.26 | 26.52 |
| CDY28577 | Canola | cytosol | 20.66 | 25.93 |
| CDX91612 | Canola | nucleus | 24.26 | 25.69 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 38.03 | 24.95 |
| CDX95656 | Canola | nucleus | 23.93 | 24.91 |
| CDY53888 | Canola | nucleus | 24.59 | 24.12 |
| CDX74756 | Canola | nucleus | 24.92 | 23.38 |
| CDY18910 | Canola | nucleus | 24.59 | 23.08 |
| CDY71135 | Canola | nucleus | 28.85 | 22.45 |
| CDX72856 | Canola | nucleus | 24.26 | 22.16 |
| CDX96370 | Canola | nucleus | 24.26 | 22.09 |
| CDY39914 | Canola | nucleus, plastid | 28.2 | 21.83 |
| CDX82193 | Canola | nucleus, plastid | 23.61 | 20.45 |
| CDY03666 | Canola | nucleus, plastid | 23.61 | 20.28 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.2 | UniProt:A0A078ITM0 | EnsemblPlants:CDY52403 | ProteinID:CDY52403 | ProteinID:CDY52403.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00006850001 | InterPro:IPR017887 | PFAM:PF03634 |
| PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF4 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EF13B9 |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g49020DBnaC07g49020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITM0]
Coordinates
chrLK033083:+:46769..48192
Molecular Weight (calculated)
32232.6 Da
IEP (calculated)
8.013
GRAVY (calculated)
-0.706
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKNPNRHQ VPNFLNPPPR HQSIGDASKD DNHHHSKPAE VKDFQIVVAS DKEPNISKKP QQQQQQQNQL GPKRSSNKDR HIKVEGRGRR IRMPALCAAR
101: IFQLTRELGH KSDGETIQWL LQQAEPSIIA ATGSGTIPAS ALASAAAVSS HHLQGGSLTA GLMISHELDG GGGSSSGRPN WGVGGGDGVG GASRSSLPTG
201: LWPNVAGFGA GVQTTGMMSD GGAMSFASIL GGGNNNQMPG LELGLAQEGN VGVLNPHSFA QIYQQQMSQA QAQGRVLHHT LLHNPSHEEH QQESGEKDDS
301: QGSGR
101: IFQLTRELGH KSDGETIQWL LQQAEPSIIA ATGSGTIPAS ALASAAAVSS HHLQGGSLTA GLMISHELDG GGGSSSGRPN WGVGGGDGVG GASRSSLPTG
201: LWPNVAGFGA GVQTTGMMSD GGAMSFASIL GGGNNNQMPG LELGLAQEGN VGVLNPHSFA QIYQQQMSQA QAQGRVLHHT LLHNPSHEEH QQESGEKDDS
301: QGSGR
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.