Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G428700.1 | Wheat | nucleus | 67.96 | 94.05 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 69.03 | 91.98 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 67.31 | 91.79 |
| Os01t0924400-01 | Rice | nucleus | 52.26 | 76.66 |
| EES01992 | Sorghum | nucleus | 51.4 | 73.54 |
| Zm00001d011985_P001 | Maize | nucleus | 49.68 | 73.33 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 50.97 | 73.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.81 | 52.86 |
| GSMUA_Achr11P... | Banana | nucleus | 27.1 | 50.6 |
| GSMUA_Achr11P... | Banana | nucleus | 27.74 | 44.95 |
| CDY20065 | Canola | cytosol | 25.59 | 44.24 |
| CDY00171 | Canola | nucleus | 25.38 | 42.75 |
| PGSC0003DMT400052203 | Potato | nucleus | 21.29 | 42.67 |
| Bra039096.1-P | Field mustard | nucleus | 25.38 | 42.45 |
| GSMUA_Achr7P23010_001 | Banana | nucleus | 27.31 | 41.91 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 26.45 | 41.55 |
| Solyc02g068200.1.1 | Tomato | nucleus | 24.3 | 41.54 |
| AT3G27010.1 | Thale cress | nucleus | 27.74 | 41.08 |
| PGSC0003DMT400090661 | Potato | nucleus | 24.52 | 40.86 |
| GSMUA_Achr1P27500_001 | Banana | nucleus | 25.38 | 40.83 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 18.28 | 40.09 |
| GSMUA_Achr10P... | Banana | nucleus | 20.22 | 40.0 |
| GSMUA_Achr5P25030_001 | Banana | nucleus | 24.52 | 39.72 |
| Bra025244.1-P | Field mustard | nucleus | 26.02 | 39.41 |
| GSMUA_Achr7P02680_001 | Banana | nucleus | 24.73 | 39.12 |
| CDY13675 | Canola | nucleus | 26.02 | 38.91 |
| CDY52403 | Canola | nucleus | 24.95 | 38.03 |
| KRG94577 | Soybean | nucleus | 26.67 | 37.58 |
| KRH06910 | Soybean | nucleus | 27.74 | 37.39 |
| GSMUA_Achr6P07930_001 | Banana | cytosol | 15.05 | 29.54 |
| HORVU2Hr1G090640.1 | Barley | plastid | 12.69 | 29.21 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 16.13 | 28.09 |
| HORVU6Hr1G059930.1 | Barley | plastid | 12.9 | 25.97 |
| HORVU7Hr1G038130.1 | Barley | nucleus | 20.0 | 23.25 |
| HORVU6Hr1G075650.1 | Barley | nucleus | 19.78 | 22.89 |
| HORVU5Hr1G035980.1 | Barley | cytosol | 18.49 | 22.57 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 12.9 | 21.98 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 16.77 | 20.8 |
| HORVU4Hr1G019380.1 | Barley | nucleus, plastid | 16.99 | 20.57 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.2 | UniProt:A0A287MDP3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:HORVU3Hr1G095400 | EnsemblPlants:HORVU3Hr1G095400.2 | InterPro:IPR017887 | PFAM:PF03634 |
| PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF1 | InterPro:TF_TCP_subgr | TMHMM:TMhelix | InterPro:Transcription_factor_TCP |
| UniParc:UPI000B488CD3 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:649837156..649841877
Molecular Weight (calculated)
49571.3 Da
IEP (calculated)
7.477
GRAVY (calculated)
-0.657
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: ERHCRGGRKS GEQSKNPESG RGIYLSIYLL SLDFLIPPSL PPSHPLSLSL PGVFSSLPPR RHLRSIIGLL LLLVLAWFLS EGRDLIGGGR RKLLVLGDGR
101: TDGRPAGRQV GGVVGLRVGV EMDPKFPPPP PPNKAEPTSA ATATTTTSSP STTPAQHHHH QHQQQQQQLD REQYHHPPQQ EQPPPPQHQL QIQVHQQQED
201: AGGGGGKEQP PPQQQVVLAA AGDRRVQALG PKRSSNKDRH TKVDGRGRRI RMPALCAARI FQLTRELGHK SDGETVQWLL QQAEPAIVAA TGTGTIPASA
301: LSSVAPSLPS PTSALAGRPH HHHHMWGPPP ASAGFSQAGF MNSSGADGGG IGGLMQRIGL PAGIELPGGG AGGMGGHIGF APMFASHAAA AIPGLELGLS
401: QEGHIGVLSQ FYHQVGSAGA SGQLQHPHPH QHHHHEQHHH HQQQQQEEDG EEEREDGDSE EESGQ
101: TDGRPAGRQV GGVVGLRVGV EMDPKFPPPP PPNKAEPTSA ATATTTTSSP STTPAQHHHH QHQQQQQQLD REQYHHPPQQ EQPPPPQHQL QIQVHQQQED
201: AGGGGGKEQP PPQQQVVLAA AGDRRVQALG PKRSSNKDRH TKVDGRGRRI RMPALCAARI FQLTRELGHK SDGETVQWLL QQAEPAIVAA TGTGTIPASA
301: LSSVAPSLPS PTSALAGRPH HHHHMWGPPP ASAGFSQAGF MNSSGADGGG IGGLMQRIGL PAGIELPGGG AGGMGGHIGF APMFASHAAA AIPGLELGLS
401: QEGHIGVLSQ FYHQVGSAGA SGQLQHPHPH QHHHHEQHHH HQQQQQEEDG EEEREDGDSE EESGQ
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.