Factsheet for GSMUA_Achr10P11790_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P07930_001	Banana	cytosol	52.34	51.9
GSMUA_AchrUn_...	Banana	nucleus	39.15	40.53
GSMUA_Achr11P...	Banana	nucleus	49.36	40.42
GSMUA_Achr11P...	Banana	nucleus	41.7	39.36
GSMUA_Achr1P27500_001	Banana	nucleus	46.81	38.06
GSMUA_Achr5P25030_001	Banana	nucleus	46.38	37.98
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	32.77	36.32
GSMUA_Achr7P02680_001	Banana	nucleus	44.68	35.71
GSMUA_Achr7P23010_001	Banana	nucleus	45.53	35.31
Zm00001d011985_P001	Maize	nucleus	42.55	31.75
EES01992	Sorghum	nucleus	43.4	31.38
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	42.55	30.86
GSMUA_Achr6P02720_001	Banana	nucleus	34.89	30.37
Os01t0924400-01	Rice	nucleus	40.85	30.28
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	30.64	29.51
GSMUA_Achr7P20990_001	Banana	nucleus	33.19	29.1
GSMUA_Achr4P00500_001	Banana	nucleus	33.62	29.04
TraesCS3D01G428700.1	Wheat	nucleus	40.43	28.27
TraesCS3A01G436100.1	Wheat	nucleus, plastid	40.43	27.86
GSMUA_Achr3P12320_001	Banana	cytosol	23.4	27.23
TraesCS3B01G470700.1	Wheat	nucleus	40.43	27.22
GSMUA_Achr11P...	Banana	nucleus	22.98	23.89
GSMUA_Achr5P03320_001	Banana	cytosol	18.72	23.28
GSMUA_Achr2P10690_001	Banana	cytosol, mitochondrion, nucleus, plastid	20.0	22.27
GSMUA_Achr7P17990_001	Banana	nucleus	31.06	21.73
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	29.36	21.7
GSMUA_Achr4P27220_001	Banana	nucleus	20.0	21.36
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	40.0	20.22
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	29.36	20.12
GSMUA_Achr6P36470_001	Banana	nucleus	31.91	19.74
GSMUA_Achr6P17840_001	Banana	cytosol	24.68	14.95
GSMUA_Achr10P...	Banana	nucleus	21.28	12.38

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G11790_001	EnsemblPlants:GSMUA_Achr10P11790_001
EnsemblPlants:GSMUA_Achr10T11790_001	InterPro:IPR017887	UniProt:M0RHF5	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF4	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000294A40E	SEG:seg	:

Description

TCP family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G11790_001]

Coordinates

chr10:+:21110324..21111582

Molecular Weight (calculated)

26008.6 Da

IEP (calculated)

10.201

GRAVY (calculated)

-0.700

Length

235 amino acids

Sequence
(BLAST)

001: MTSQPNRNAH LAVTAEKGEQ RRHLAPKRNS KNDRHTKVDG RGRRVRMPAL CAARIFQLTR ELGHKSDGET IQWLLQQAES SIIAATGSGT IPASFQESGQ
101: SRVNWATFGR PHPELWLPPV DGFDTSFFHS AAAAMPVASN LPRIGFPALE FPGTNPNQMS FTSLLGGQRP PMPGLELGLS QHGQVRIFNP QALSQFYQHI
201: GQGSDHLHLH QHQQVQQEQH QKSPTPNEKS EVSAE

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.