Factsheet for GSMUA_Achr7P02680_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	63.95	65.51
GSMUA_Achr1P27500_001	Banana	nucleus	63.95	65.05
GSMUA_Achr5P25030_001	Banana	nucleus	57.82	59.23
GSMUA_Achr7P23010_001	Banana	nucleus	60.54	58.75
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	39.8	55.19
GSMUA_AchrUn_...	Banana	nucleus	38.78	50.22
GSMUA_Achr11P...	Banana	nucleus	39.8	46.99
GSMUA_Achr10P...	Banana	nucleus	35.71	44.68
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	43.54	39.51
EES01992	Sorghum	nucleus	43.54	39.38
Zm00001d011985_P001	Maize	nucleus	42.18	39.37
Os01t0924400-01	Rice	nucleus	42.18	39.12
TraesCS3D01G428700.1	Wheat	nucleus	39.46	34.52
TraesCS3A01G436100.1	Wheat	nucleus, plastid	39.8	34.31
GSMUA_Achr6P07930_001	Banana	cytosol	27.21	33.76
TraesCS3B01G470700.1	Wheat	nucleus	39.8	33.52
GSMUA_Achr6P02720_001	Banana	nucleus	29.25	31.85
GSMUA_Achr7P20990_001	Banana	nucleus	28.57	31.34
GSMUA_Achr4P00500_001	Banana	nucleus	28.91	31.25
GSMUA_Achr3P12320_001	Banana	cytosol	19.73	28.71
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	22.45	27.05
GSMUA_Achr5P03320_001	Banana	cytosol	16.33	25.4
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	39.12	24.73
GSMUA_Achr7P17990_001	Banana	nucleus	28.23	24.7
GSMUA_Achr11P...	Banana	nucleus	18.03	23.45
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	24.83	22.96
GSMUA_Achr2P10690_001	Banana	cytosol, mitochondrion, nucleus, plastid	15.65	21.8
GSMUA_Achr4P27220_001	Banana	nucleus	15.99	21.36
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	23.81	20.41
GSMUA_Achr6P36470_001	Banana	nucleus	25.17	19.47
GSMUA_Achr6P17840_001	Banana	cytosol	19.39	14.69
GSMUA_Achr10P...	Banana	nucleus	19.73	14.36

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G02680_001
EnsemblPlants:GSMUA_Achr7P02680_001	EnsemblPlants:GSMUA_Achr7T02680_001	InterPro:IPR017887	UniProt:M0TE58	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF4	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000296E2D4	SEG:seg

Description

Putative Transcription factor TCP20 [Source:GMGC_GENE;Acc:GSMUA_Achr7G02680_001]

Coordinates

chr7:-:2165994..2166977

Molecular Weight (calculated)

31023.5 Da

IEP (calculated)

9.016

GRAVY (calculated)

-0.496

Length

294 amino acids

Sequence
(BLAST)

001: MDRKSCAKLP RDVPKFQQTL CLPQGDKKEP TTAADSVASA ERRDLLPSAA LGGRELQVAA AREKDEQRRQ LAPRRSSNKD RHTKVDGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETVQW LLQQAEPSII AATGTGTIPA AAAAVQPNWA AVGAAGLPRS HPGLWPTPVC GFDSGFMRPS AAASSSSNNV GAGGGDASIG
201: SFVQRTGLHG LELAGSNLSA MSFASMLGGH GQQLPGLELG LSQDGRIGVW NLEAMGQIYQ QMEPGRLVAG ANGAGQWQQQ QTHQSDDSSQ GSEQ

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.