Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G428700.1 | Wheat | nucleus | 92.84 | 96.43 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 92.26 | 94.43 |
| Os01t0924400-01 | Rice | nucleus | 71.06 | 78.23 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 69.91 | 75.31 |
| EES01992 | Sorghum | nucleus | 69.91 | 75.08 |
| Zm00001d011985_P001 | Maize | nucleus | 67.62 | 74.92 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 91.98 | 69.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.24 | 54.19 |
| GSMUA_Achr11P... | Banana | nucleus | 36.68 | 51.41 |
| GSMUA_Achr11P... | Banana | nucleus | 37.25 | 45.3 |
| CDY20065 | Canola | cytosol | 34.1 | 44.24 |
| PGSC0003DMT400052203 | Potato | nucleus | 28.65 | 43.1 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 36.1 | 42.57 |
| Bra039096.1-P | Field mustard | nucleus | 33.81 | 42.45 |
| CDY00171 | Canola | nucleus | 33.52 | 42.39 |
| GSMUA_Achr7P23010_001 | Banana | nucleus | 36.39 | 41.91 |
| GSMUA_Achr1P27500_001 | Banana | nucleus | 34.67 | 41.87 |
| PGSC0003DMT400090661 | Potato | nucleus | 33.24 | 41.58 |
| Solyc02g068200.1.1 | Tomato | nucleus | 32.38 | 41.54 |
| AT3G27010.1 | Thale cress | nucleus | 36.96 | 41.08 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 24.93 | 41.04 |
| GSMUA_Achr10P... | Banana | nucleus | 27.22 | 40.43 |
| GSMUA_Achr5P25030_001 | Banana | nucleus | 32.95 | 40.07 |
| GSMUA_Achr7P02680_001 | Banana | nucleus | 33.52 | 39.8 |
| Bra025244.1-P | Field mustard | nucleus | 34.67 | 39.41 |
| CDY13675 | Canola | nucleus | 34.67 | 38.91 |
| CDY52403 | Canola | nucleus | 33.24 | 38.03 |
| KRG94577 | Soybean | nucleus | 35.82 | 37.88 |
| KRH06910 | Soybean | nucleus | 37.25 | 37.68 |
| TraesCS2B01G062900.1 | Wheat | plastid | 14.33 | 31.25 |
| TraesCS6B01G262600.1 | Wheat | plastid | 17.48 | 30.65 |
| GSMUA_Achr6P07930_001 | Banana | cytosol | 20.63 | 30.38 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 14.33 | 25.25 |
| TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 25.5 | 23.92 |
| TraesCS2B01G392900.1 | Wheat | cytosol | 16.91 | 23.51 |
| TraesCS6B01G334900.1 | Wheat | nucleus | 26.07 | 22.64 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 21.49 | 21.49 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 20.34 | 20.94 |
| TraesCS4B01G093700.1 | Wheat | nucleus, plastid | 22.35 | 20.47 |
| TraesCS5B01G117100.1 | Wheat | nucleus | 24.36 | 20.38 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G470700.1 | EnsemblPlantsGene:TraesCS3B01G470700 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF1 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | MapMan:27.1.5.2 |
Description
No Description!
Coordinates
chr3B:+:718849990..718851039
Molecular Weight (calculated)
36889.6 Da
IEP (calculated)
6.868
GRAVY (calculated)
-0.862
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKFPPPPP LNKAEPTSAA TATTTTSSPS STPAQHHQQQ HHQQQQLDRE QYHHPPAQEQ QQPPHQQHLQ IQVHQQQEDG GGGGGKEQQQ QQQQQAVVAA
101: AAAAGDRRVQ ALGPKRSSNK DRHTKVDGRG RRIRMPALCA ARIFQLTREL GHKSDGETVQ WLLQQAEPAI VAATGTGTIP ASALSSVAPS LPSPTSALAG
201: RPHHHHHMWG PPPASAGFSQ AGFMNSSGAD GGGIGGLMQR IGLPAGIELP GGGAGGMGGH IGFAPMFAGH AAAAIPGLEL GLSQEGHIGV LSQFYHQVGG
301: AAGASGQLQH PHPHPHQHHH HEQQHHQQQQ QQDGEDERED GDSEEESGQ
101: AAAAGDRRVQ ALGPKRSSNK DRHTKVDGRG RRIRMPALCA ARIFQLTREL GHKSDGETVQ WLLQQAEPAI VAATGTGTIP ASALSSVAPS LPSPTSALAG
201: RPHHHHHMWG PPPASAGFSQ AGFMNSSGAD GGGIGGLMQR IGLPAGIELP GGGAGGMGGH IGFAPMFAGH AAAAIPGLEL GLSQEGHIGV LSQFYHQVGG
301: AAGASGQLQH PHPHPHQHHH HEQQHHQQQQ QQDGEDERED GDSEEESGQ
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.