Factsheet for TraesCS3A01G436100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G428700.1	Wheat	nucleus	95.31	96.73
TraesCS3B01G470700.1	Wheat	nucleus	94.43	92.26
Os01t0924400-01	Rice	nucleus	72.14	77.6
EES01992	Sorghum	nucleus	71.26	74.77
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	70.38	74.07
Zm00001d011985_P001	Maize	nucleus	68.04	73.65
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	91.79	67.31
GSMUA_AchrUn_...	Banana	nucleus	35.78	53.74
GSMUA_Achr11P...	Banana	nucleus	36.95	50.6
GSMUA_Achr11P...	Banana	nucleus	38.12	45.3
CDY20065	Canola	cytosol	34.9	44.24
PGSC0003DMT400052203	Potato	nucleus	29.33	43.1
VIT_14s0068g01690.t01	Wine grape	nucleus	36.95	42.57
Bra039096.1-P	Field mustard	nucleus	34.6	42.45
CDY00171	Canola	nucleus	34.31	42.39
GSMUA_Achr7P23010_001	Banana	nucleus	37.24	41.91
PGSC0003DMT400090661	Potato	nucleus	34.02	41.58
Solyc02g068200.1.1	Tomato	nucleus	33.14	41.54
GSMUA_Achr1P27500_001	Banana	nucleus	35.19	41.52
AT3G27010.1	Thale cress	nucleus	38.12	41.4
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	25.51	41.04
GSMUA_Achr10P...	Banana	nucleus	27.86	40.43
GSMUA_Achr5P25030_001	Banana	nucleus	33.72	40.07
GSMUA_Achr7P02680_001	Banana	nucleus	34.31	39.8
Bra025244.1-P	Field mustard	nucleus	35.48	39.41
CDY13675	Canola	nucleus	35.48	38.91
KRG94577	Soybean	nucleus	37.24	38.48
KRH06910	Soybean	nucleus	38.71	38.26
CDY52403	Canola	nucleus	34.02	38.03
TraesCS6A01G233800.1	Wheat	plastid	18.18	30.54
GSMUA_Achr6P07930_001	Banana	cytosol	21.11	30.38
TraesCS2A01G376000.1	Wheat	plastid	17.3	28.78
TraesCS6A01G412800.1	Wheat	mitochondrion	14.66	25.25
TraesCS6A01G306500.1	Wheat	nucleus	26.69	22.52
TraesCS4A01G355900.1	Wheat	nucleus	19.35	22.3
TraesCS5A01G121800.1	Wheat	nucleus	26.39	21.48
TraesCS4A01G222700.1	Wheat	nucleus, plastid	23.17	20.52
TraesCS5A01G309300.1	Wheat	cytosol, nucleus, peroxisome	20.23	20.41

Protein Annotations

EnsemblPlants:TraesCS3A01G436100.1	EnsemblPlantsGene:TraesCS3A01G436100	InterPro:IPR017887	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	PANTHER:PTHR31072
PANTHER:PTHR31072:SF1	PFAM:PF03634	PFscan:PS51369	SEG:seg	MapMan:15.5.19	MapMan:27.1.5.2

Description

No Description!

Coordinates

chr3A:+:679694753..679695778

Molecular Weight (calculated)

35929.6 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.826

Length

341 amino acids

Sequence
(BLAST)

001: MDPKFPPPPP LNKAEPTSAA TATTTSSTST PPAQQQHQQL DREQYRHPPQ QQEQQPPQHQ QHLQIQVHQQ QEDGGGGGGG GKEQQQQQVV VAAAAAGDRR
101: VQALGPKRSS NKDRHTKVDG RGRRIRMPAL CAARIFQLTR ELGHKSDGET VQWLLQQAEP AIVAATGTGT IPASALSSVA PSLPSPTSAL AGRPHHHHHM
201: WGPPPASAGF SQAGFMNSSG ADGGGIGGLM QRIGLPAGIE LPGGGAGGMG GHIGFAPMFA GHAAAAIPGL ELGLSQEGHI GVLSQFYHQV GGAAGASGQL
301: QHPHPHQHHH HEQHHHQQQQ QQQEDGEDER EDGDSEEESG Q

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.