Factsheet for VIT_14s0068g01690.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052203	Potato	nucleus	59.8	76.29
KRG94577	Soybean	nucleus	82.77	74.24
KRH06910	Soybean	nucleus	83.78	71.88
PGSC0003DMT400090661	Potato	nucleus	66.22	70.25
Solyc02g068200.1.1	Tomato	nucleus	63.51	69.12
CDY20065	Canola	cytosol	54.05	59.48
Bra025244.1-P	Field mustard	nucleus	60.47	58.31
Bra039096.1-P	Field mustard	nucleus	54.73	58.27
AT3G27010.1	Thale cress	nucleus	61.49	57.96
CDY13675	Canola	nucleus	60.47	57.56
CDY00171	Canola	nucleus	52.7	56.52
CDY52403	Canola	nucleus	57.09	55.41
GSMUA_Achr5P25030_001	Banana	nucleus	49.66	51.22
Zm00001d011985_P001	Maize	nucleus	42.57	40.0
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	43.58	39.81
Os01t0924400-01	Rice	nucleus	42.57	39.75
EES01992	Sorghum	nucleus	43.58	39.69
TraesCS3D01G428700.1	Wheat	nucleus	42.57	37.5
TraesCS3A01G436100.1	Wheat	nucleus, plastid	42.57	36.95
VIT_16s0022g02480.t01	Wine grape	nucleus	20.95	36.69
TraesCS3B01G470700.1	Wheat	nucleus	42.57	36.1
VIT_08s0040g01600.t01	Wine grape	nucleus, plastid	21.96	31.86
VIT_10s0042g00170.t01	Wine grape	nucleus	25.68	29.8
VIT_18s0117g00340.t01	Wine grape	nucleus	34.46	28.73
VIT_17s0000g06020.t01	Wine grape	nucleus	35.47	28.53
VIT_01s0026g02200.t01	Wine grape	nucleus	32.43	27.2
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	41.55	26.45
VIT_15s0048g01150.t01	Wine grape	nucleus	27.36	23.89
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	35.14	22.61
VIT_02s0025g04590.t01	Wine grape	nucleus	28.04	20.19

Protein Annotations

EntrezGene:100253170	wikigene:100253170	MapMan:15.5.19	MapMan:27.1.5.2	ProteinID:CCB47006	ProteinID:CCB47006.1
UniProt:F6H463	EMBL:FN595232	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
EntrezGene:LOC100253170	wikigene:LOC100253170	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF4
TIGR:TC57296	TIGR:TC59147	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00018C81FC	ArrayExpress:VIT_14s0068g01690
EnsemblPlantsGene:VIT_14s0068g01690	EnsemblPlants:VIT_14s0068g01690.t01	RefSeq:XP_002271949	RefSeq:XP_002271949.1	RefSeq:XP_010660729.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:25396261..25397837

Molecular Weight (calculated)

31513.0 Da

IEP (calculated)

9.548

GRAVY (calculated)

-0.625

Length

296 amino acids

Sequence
(BLAST)

001: MDPKGSKQPQ EVPNFLSLPQ PNMGENKPAE VKDFQIVIAD KEEGKKQLAP KRSSNKDRHT KVEGRGRRIR MPALCAARIF QLTRELGHKS DGETIQWLLQ
101: QAEPSIIAAT GTGTIPASAL AAAGGSVSQQ GTSISAGLHQ KIDELGGSSI GSGSSRTSWA MVGANLGRPH VATGLWPPVS GFGFQSSSGP STTNLGNESS
201: NYLQKIAFPG FDLPATNLGP MSFTSILGGS NQQLPGLELG LSQDGHIGVL NSQALSQIYQ QMGQARVHQQ QQHQHQHQHQ HQQQPPAKDD SQGSGQ

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.