Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20065 | Canola | cytosol | 92.81 | 95.91 |
| CDY00171 | Canola | nucleus | 88.13 | 88.77 |
| Bra025244.1-P | Field mustard | nucleus | 79.5 | 71.99 |
| AT3G27010.1 | Thale cress | nucleus | 78.06 | 69.11 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 58.27 | 54.73 |
| PGSC0003DMT400052203 | Potato | nucleus | 44.96 | 53.88 |
| PGSC0003DMT400090661 | Potato | nucleus | 50.0 | 49.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.29 | 49.34 |
| Solyc02g068200.1.1 | Tomato | nucleus | 47.84 | 48.9 |
| KRG94577 | Soybean | nucleus | 57.19 | 48.18 |
| KRH06910 | Soybean | nucleus | 59.71 | 48.12 |
| GSMUA_Achr11P... | Banana | nucleus | 39.57 | 44.18 |
| Zm00001d011985_P001 | Maize | nucleus | 42.09 | 37.14 |
| EES01992 | Sorghum | nucleus | 41.73 | 35.69 |
| Os01t0924400-01 | Rice | nucleus | 40.29 | 35.33 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 41.01 | 35.19 |
| TraesCS3D01G428700.1 | Wheat | nucleus | 42.45 | 35.12 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 42.45 | 34.6 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 42.45 | 33.81 |
| Bra025528.1-P | Field mustard | nucleus | 26.26 | 32.59 |
| Bra026506.1-P | Field mustard | cytosol, mitochondrion, nucleus | 24.82 | 31.94 |
| Bra009338.1-P | Field mustard | nucleus | 24.1 | 28.39 |
| Bra005984.1-P | Field mustard | nucleus | 23.74 | 28.21 |
| Bra028662.1-P | Field mustard | nucleus | 23.02 | 27.95 |
| Bra009667.1-P | Field mustard | nucleus | 24.46 | 27.2 |
| Bra029366.1-P | Field mustard | cytosol | 16.91 | 26.7 |
| Bra004407.1-P | Field mustard | nucleus, plastid | 30.22 | 26.17 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 42.45 | 25.38 |
| Bra022568.1-P | Field mustard | cytosol | 25.9 | 24.24 |
| Bra003986.1-P | Field mustard | cytosol | 21.22 | 24.08 |
| Bra000395.1-P | Field mustard | nucleus | 26.62 | 23.79 |
| Bra007875.1-P | Field mustard | cytosol | 20.86 | 23.58 |
| Bra004929.1-P | Field mustard | nucleus | 26.62 | 22.84 |
| Bra027886.1-P | Field mustard | nucleus, plastid | 28.78 | 20.3 |
| Bra016090.1-P | Field mustard | nucleus | 24.1 | 18.82 |
| Bra018126.1-P | Field mustard | nucleus | 30.22 | 18.03 |
| Bra008001.1-P | Field mustard | nucleus, plastid | 23.38 | 17.38 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.2 | EnsemblPlantsGene:Bra039096 | EnsemblPlants:Bra039096.1 | EnsemblPlants:Bra039096.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | UniProt:M4FDC5 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF4 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0002541B27 | SEG:seg |
Description
AT3G27010 (E=7e-063) AT-TCP20, PCF1, TCP20 | AT-TCP20; transcription factor
Coordinates
chrA09:-:1173679..1174515
Molecular Weight (calculated)
29673.3 Da
IEP (calculated)
6.572
GRAVY (calculated)
-0.704
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKNPNQYQ VSNFLIPPPQ PRDASDDNKD DNHHHNSPAE VKDFQIVVAS DKEPNNNSKK QLAPKRSSNK DRHTKVEGRG RRIRMPALCA ARIFQLTREL
101: GHKSDGETIQ WLLQQAEPSL IAATGSGTVP ASALASAASA VVSNQGGSLT AGLMISHHDL DCGGSSSGRP SWGEGGGEVW PNGAGYRIGF PGFDFPGGAM
201: SFASIFGAGG GGNGNQMLEL ELGLSQEGNV GVLNQQIYQQ MAQAQAQGRV LHHTLHHNPG HEDHQQESCG RDESQGSF
101: GHKSDGETIQ WLLQQAEPSL IAATGSGTVP ASALASAASA VVSNQGGSLT AGLMISHHDL DCGGSSSGRP SWGEGGGEVW PNGAGYRIGF PGFDFPGGAM
201: SFASIFGAGG GGNGNQMLEL ELGLSQEGNV GVLNQQIYQQ MAQAQAQGRV LHHTLHHNPG HEDHQQESCG RDESQGSF
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.