Factsheet for Bra026506.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16842	Canola	nucleus	97.22	97.67
CDX87179	Canola	nucleus	95.37	95.81
Bra029366.1-P	Field mustard	cytosol	64.81	79.55
Bra009667.1-P	Field mustard	nucleus	81.48	70.4
Bra028662.1-P	Field mustard	nucleus	72.69	68.56
Bra009338.1-P	Field mustard	nucleus	72.69	66.53
Bra005984.1-P	Field mustard	nucleus	69.91	64.53
Zm00001d018530_P001	Maize	plastid	55.56	57.97
Os03t0422702-00	Rice	cytosol, plastid	33.33	57.14
Os02t0828566-01	Rice	nucleus	61.11	55.93
TraesCS6D01G397000.1	Wheat	mitochondrion	49.07	53.81
TraesCS6B01G462100.1	Wheat	mitochondrion	49.07	53.54
EES07800	Sorghum	plastid	60.19	53.5
TraesCS6A01G412800.1	Wheat	mitochondrion	48.61	53.03
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	59.72	52.87
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	59.72	48.31
Bra016090.1-P	Field mustard	nucleus	47.22	28.65
Bra025528.1-P	Field mustard	nucleus	27.31	26.34
Bra008001.1-P	Field mustard	nucleus, plastid	44.91	25.94
Bra039096.1-P	Field mustard	nucleus	31.94	24.82
Bra003986.1-P	Field mustard	cytosol	27.78	24.49
Bra000395.1-P	Field mustard	nucleus	35.19	24.44
Bra007875.1-P	Field mustard	cytosol	27.78	24.39
Bra022568.1-P	Field mustard	cytosol	32.87	23.91
Bra025244.1-P	Field mustard	nucleus	33.8	23.78
Bra004929.1-P	Field mustard	nucleus	35.65	23.77
Bra004407.1-P	Field mustard	nucleus, plastid	34.72	23.36
Bra027886.1-P	Field mustard	nucleus, plastid	37.96	20.81
Bra018126.1-P	Field mustard	nucleus	39.35	18.24

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	EnsemblPlantsGene:Bra026506	EnsemblPlants:Bra026506.1	EnsemblPlants:Bra026506.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:M4ECJ6	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF7	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002546DD6	SEG:seg

Description

AT5G23280 (E=9e-046) | TCP family transcription factor, putative

Coordinates

chrA01:+:8952243..8952893

Molecular Weight (calculated)

23118.2 Da

IEP (calculated)

9.867

GRAVY (calculated)

-0.491

Length

216 amino acids

Sequence
(BLAST)

001: MSNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STVSASLRGN STTTTNCSLS
101: SSLDQKPMLG SSPFILGKRV RADEDTPSGF WAVPARQEFG QVWSFAAGAT QEMLLQQQQQ QAAGLFVHQQ QQQQQAAMGE ASAARVGNYL PGHLNLLASL
201: SSGAPGSGRG EDDDQR

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.