Factsheet for Bra027886.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003986.1-P	nucleus
Bra004407.1-P	nucleus
Bra007875.1-P	nucleus
Bra012992.1-P
Bra027886.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	Bra027886.1-P	AT1G58100.1	23760157
AT1G58100.1	Bra027886.1-P	AT1G58100.1	23760157
AT1G58100.1	Bra003986.1-P	AT1G69690.1	23760157
AT1G58100.1	Bra004407.1-P	AT1G69690.1	23760157
AT1G58100.1	Bra007875.1-P	AT1G69690.1	23760157
AT1G58100.1	Bra012992.1-P	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39914	Canola	nucleus, plastid	98.98	98.98
CDY71135	Canola	nucleus	96.7	97.19
AT1G58100.1	Thale cress	nucleus	79.95	78.55
KRH06094	Soybean	plastid	38.58	42.11
HORVU5Hr1G035980.1	Barley	cytosol	40.61	41.99
Os12t0173300-00	Rice	nucleus	42.39	39.95
TraesCS4B01G093700.1	Wheat	nucleus, plastid	37.82	39.11
TraesCS4D01G090500.1	Wheat	nucleus, plastid	38.07	38.96
TraesCS4A01G222700.1	Wheat	nucleus, plastid	38.07	38.96
HORVU4Hr1G019380.1	Barley	nucleus, plastid	37.31	38.28
Zm00001d023565_P001	Maize	nucleus	39.34	38.27
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	37.31	37.98
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	20.81	37.96
TraesCS5A01G121800.1	Wheat	nucleus	40.36	37.95
Zm00001d041866_P001	Maize	nucleus	39.34	37.26
TraesCS5B01G117100.1	Wheat	nucleus	39.09	36.93
Bra029366.1-P	Field mustard	cytosol	15.99	35.8
Os11t0175700-00	Rice	nucleus, plastid	36.55	35.47
Bra028662.1-P	Field mustard	nucleus	20.56	35.37
Bra005984.1-P	Field mustard	nucleus	20.81	35.04
Bra007875.1-P	Field mustard	cytosol	21.83	34.96
Bra009667.1-P	Field mustard	nucleus	22.08	34.8
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	40.61	34.78
Bra009338.1-P	Field mustard	nucleus	20.56	34.32
Zm00001d004791_P001	Maize	mitochondrion, nucleus	17.51	33.66
Bra003986.1-P	Field mustard	cytosol	20.81	33.47
Bra004407.1-P	Field mustard	nucleus, plastid	26.9	33.02
Bra039096.1-P	Field mustard	nucleus	20.3	28.78
Bra025528.1-P	Field mustard	nucleus	16.24	28.57
Bra025244.1-P	Field mustard	nucleus	22.08	28.34
Bra000395.1-P	Field mustard	nucleus	20.81	26.37
GSMUA_Achr6P17840_001	Banana	cytosol	25.89	26.29
Bra004929.1-P	Field mustard	nucleus	21.07	25.62
Bra022568.1-P	Field mustard	cytosol	19.29	25.59
Bra016090.1-P	Field mustard	nucleus	22.84	25.28
GSMUA_Achr10P...	Banana	nucleus	25.38	24.75
Bra018126.1-P	Field mustard	nucleus	28.17	23.82
Bra008001.1-P	Field mustard	nucleus, plastid	22.59	23.8

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra027886	EnsemblPlants:Bra027886.1	EnsemblPlants:Bra027886.1-P	GO:GO:0000978	GO:GO:0001047
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044212	InterPro:IPR017887	UniProt:M4EGH2
PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF64	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI0002542834	SEG:seg	:	:	:	:

Description

AT1G58100 (E=4e-120) | TCP family transcription factor, putative

Coordinates

chrA09:+:9599468..9600652

Molecular Weight (calculated)

41387.6 Da

IEP (calculated)

6.568

GRAVY (calculated)

-0.682

Length

394 amino acids

Sequence
(BLAST)

001: MDLSDDAAAA RGGSRHLVDP SLSIVPRSTP PEDPTTSSPA TAAATTSGVV TKRSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ
101: QAEPAIVAAT GTGTIPANFS SLSVSLRSSG STLSAPPSKS VPLYGALGLT HHQYEEQGGA FGAHTPPLLG FHHHLQQHQQ QQHHQQAPAE TIPGPDGESF
201: SRKRYRSVDS SKEDGEGKQN ENKSLKESEP PAAATGAPMW AVAPTNRSAG GNTFWMLPVP TTAAGNQPAA MESSSNASRA HMWPFGGGGA GAGGGGATHF
301: MAGTGFSFPM DQYRGSPLQL GSFLAQPQQP NQNIGLSIPD SNLGVLAALN AAYPRGGNAN AEQVNNAVEH QEKQQPQQSD QDDDSRDENS NSDG

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.