Factsheet for Os11t0175700-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os07t0603900-01
Os11t0175700-00	nucleus
Os12t0173300-00	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	Os11t0175700-00	AT1G58100.1	23760157
AT1G58100.1	Os12t0173300-00	AT1G58100.1	23760157
AT1G58100.1	Os11t0175700-00	AT1G58100.1	23760157
AT1G58100.1	Os12t0173300-00	AT1G58100.1	23760157
AT1G58100.1	Os07t0603900-01	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G019380.1	Barley	nucleus, plastid	65.76	69.53
TraesCS4B01G093700.1	Wheat	nucleus, plastid	64.78	69.03
TraesCS4D01G090500.1	Wheat	nucleus, plastid	65.27	68.83
TraesCS4A01G222700.1	Wheat	nucleus, plastid	65.27	68.83
Os12t0173300-00	Rice	nucleus	50.25	48.8
Os03t0422702-00	Rice	cytosol, plastid	13.55	43.65
Zm00001d004791_P001	Maize	mitochondrion, nucleus	21.43	42.44
KRH06094	Soybean	plastid	36.21	40.72
Os02t0828566-01	Rice	nucleus	22.17	38.14
Os02t0635800-01	Rice	nucleus	19.7	37.91
Os04t0542302-00	Rice	cytosol, mitochondrion, nucleus	17.49	37.37
AT1G58100.1	Thale cress	nucleus	36.7	37.16
CDY39914	Canola	nucleus, plastid	35.71	36.8
CDY71135	Canola	nucleus	35.47	36.73
Bra027886.1-P	Field mustard	nucleus, plastid	35.47	36.55
Os04t0526000-01	Rice	plastid	18.47	36.41
Os04t0194600-01	Rice	plastid	14.53	33.52
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	37.93	33.48
Solyc01g103780.2.1	Tomato	nucleus	33.74	30.79
PGSC0003DMT400064164	Potato	nucleus	39.66	30.15
Os06t0226700-01	Rice	nucleus	27.34	28.68
GSMUA_Achr6P17840_001	Banana	cytosol	26.6	27.84
GSMUA_Achr10P...	Banana	nucleus	27.34	27.48
Os02t0747400-01	Rice	nucleus	27.59	27.32
Os01t0924400-01	Rice	nucleus	19.46	24.92
Os08t0544800-01	Rice	nucleus	22.17	24.13
Os09t0521300-00	Rice	nucleus	20.44	21.78

Protein Annotations

MapMan:15.5.19	UniProt:A0A0P0XZQ5	ProteinID:BAT12910.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	EnsemblPlantsGene:Os11g0175700	EnsemblPlants:Os11t0175700-00	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF74	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00039392DF	SEG:seg

Description

PROLIFERATING CELL FACTOR 3Similar to Transcription factor PCF3. (Os11t0175700-00)

Coordinates

chr11:-:3758793..3760416

Molecular Weight (calculated)

41581.1 Da

IEP (calculated)

8.586

GRAVY (calculated)

-0.483

Length

406 amino acids

Sequence
(BLAST)

001: MEQQAAPSSS TSTSTNSSRS TSDHHAAAAA AAAAAAAQVA HQHHPFYYAA AQGGANTMPA PASFMGSLAI VPAAAAPGGG GGQVQAAAAP VASSEKKAVV
101: AAGAGAKRPT KDRHTKVEGR GRRIRMPALC AARVFQLTRE LGHKTDGETI EWLLQQAEPA IVAATGTGTI PANFSSLAVS LRSAASHSSS PRAAPFHHLQ
201: QQQQHDVAAM LGFHHHHHQL LPPPPPHQHP EPTPQDPGAG EFMRKRYREA DDLFKDTSRQ DPVDGATGEA EQKARAAAAA AAPPPTAPSA MWAVGPNTTG
301: ATAAFWMQPA WAFPHGAGAG AAGNTVQAPL QFMSRSSFPT AMNVTMADNN NSSNNNLGML AALNAGGGGR SGEHQHQHEG QSPAEMDHQR RANGGGGEAG
401: GAASSQ

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.