Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88112 | Sorghum | nucleus | 78.81 | 77.41 |
| Zm00001d037221_P001 | Maize | cytosol, nucleus, peroxisome | 74.68 | 76.25 |
| TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 71.32 | 74.19 |
| Zm00001d044836_P001 | Maize | nucleus | 67.44 | 73.11 |
| TraesCS7D01G187600.1 | Wheat | cytosol | 74.94 | 72.5 |
| HORVU7Hr1G038130.1 | Barley | nucleus | 73.64 | 71.25 |
| TraesCS6A01G306500.1 | Wheat | nucleus | 73.9 | 70.79 |
| Os02t0747400-01 | Rice | nucleus | 74.68 | 70.49 |
| GSMUA_Achr4P00500_001 | Banana | nucleus | 43.67 | 62.13 |
| GSMUA_Achr7P20990_001 | Banana | nucleus | 41.34 | 59.7 |
| VIT_17s0000g06020.t01 | Wine grape | nucleus | 48.58 | 51.09 |
| CDY36943 | Canola | nucleus | 23.51 | 48.15 |
| Solyc03g116320.2.1 | Tomato | nucleus | 49.35 | 46.7 |
| PGSC0003DMT400001613 | Potato | nucleus | 49.61 | 46.38 |
| PGSC0003DMT400083148 | Potato | nucleus | 48.84 | 46.1 |
| Os03t0422702-00 | Rice | cytosol, plastid | 14.99 | 46.03 |
| Solyc06g070900.2.1 | Tomato | nucleus | 49.1 | 45.67 |
| KRH63357 | Soybean | nucleus | 46.25 | 44.97 |
| KRH56919 | Soybean | nucleus | 47.8 | 44.47 |
| KRH03466 | Soybean | nucleus | 46.77 | 43.83 |
| KRH54542 | Soybean | nucleus | 45.99 | 43.63 |
| CDY24170 | Canola | nucleus | 26.87 | 42.8 |
| Os04t0542302-00 | Rice | cytosol, mitochondrion, nucleus | 20.16 | 41.05 |
| Bra018126.1-P | Field mustard | nucleus | 45.22 | 37.55 |
| AT3G47620.1 | Thale cress | nucleus | 45.99 | 36.4 |
| Os02t0828566-01 | Rice | nucleus | 21.71 | 35.59 |
| Os02t0635800-01 | Rice | nucleus | 19.12 | 35.07 |
| Os04t0526000-01 | Rice | plastid | 17.57 | 33.01 |
| Os04t0194600-01 | Rice | plastid | 14.21 | 31.25 |
| Os12t0173300-00 | Rice | nucleus | 31.27 | 28.95 |
| Os01t0924400-01 | Rice | nucleus | 23.26 | 28.39 |
| Os11t0175700-00 | Rice | nucleus, plastid | 28.68 | 27.34 |
| Os08t0544800-01 | Rice | nucleus | 23.0 | 23.86 |
| Os09t0521300-00 | Rice | nucleus | 22.48 | 22.83 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:4340553 | EMBL:AK064240 | ProteinID:BAD37305.1 | ProteinID:BAD37456.1 | ProteinID:BAF19119.2 |
| ProteinID:BAS96877.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | EnsemblPlantsGene:Os06g0226700 |
| EnsemblPlants:Os06t0226700-01 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF74 | UniProt:Q67WL3 |
| InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000042623D | RefSeq:XP_015641757.1 | SEG:seg | : |
Description
TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 19, "Teosinte branched1, Cycloidea, Proliferating cell factor (TCP)-domain protein 19", TCP-domain protein 19Similar to PCF1. (Os06t0226700-01)
Coordinates
chr6:+:6571018..6572598
Molecular Weight (calculated)
38744.0 Da
IEP (calculated)
9.169
GRAVY (calculated)
-0.399
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVTGDGGGG GQRPNFPLQL LGKKEEQTCS TSQTAGAGGG GVVGANGSAA AAPPKRTSTK DRHTKVDGRG RRIRMPAICA ARVFQLTREL GHKTDGETIE
101: WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSSLSIP SHLRLAGLAG PRFGGGARAA DAWDRVVGLG FGGAADAPSS ATSSSSSPLL LSFHSGSVGL
201: DVSPPSASTS PAAADLSRKR RWEQEMQQQQ QYQQQMAGYT QSQIPAGTVW MVPSSNAQAA GGGAPPGGGG ESIWTFPQSG SGGGGGAATV YRGVPSGLHF
301: MNFPATPMAL LPGGQQLGLA GAGGGGEGHP GILAALNAYR AQAAQPDAGA AAQNGAQGSS QHRQHQHHGG GGGGGDERHE SMSASDS
101: WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSSLSIP SHLRLAGLAG PRFGGGARAA DAWDRVVGLG FGGAADAPSS ATSSSSSPLL LSFHSGSVGL
201: DVSPPSASTS PAAADLSRKR RWEQEMQQQQ QYQQQMAGYT QSQIPAGTVW MVPSSNAQAA GGGAPPGGGG ESIWTFPQSG SGGGGGAATV YRGVPSGLHF
301: MNFPATPMAL LPGGQQLGLA GAGGGGEGHP GILAALNAYR AQAAQPDAGA AAQNGAQGSS QHRQHQHHGG GGGGGDERHE SMSASDS
001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
Arabidopsis Description
TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.