Factsheet for Os07t0489800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0656300-01
Os06t0679100-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	Os02t0656300-01	AT3G48150.1	21798944
AT3G16250.1	Os06t0679100-00	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021515_P001	Maize	plastid	60.95	67.02
EER97233	Sorghum	plastid	60.0	64.62
TraesCS7A01G108600.1	Wheat	plastid	59.52	64.1
HORVU7Hr1G023140.1	Barley	plastid	60.0	63.96
TraesCS7B01G006600.1	Wheat	plastid	59.52	63.78
TraesCS7D01G103500.1	Wheat	plastid	57.62	63.68
GSMUA_Achr11P...	Banana	plastid	49.52	55.32
Zm00001d006398_P001	Maize	plastid	52.38	55.28
CDY30147	Canola	mitochondrion	22.38	47.0
Solyc08g083360.2.1	Tomato	nucleus	38.57	42.19
CDY63822	Canola	cytosol	22.86	41.74
PGSC0003DMT400031868	Potato	plastid	39.52	41.29
VIT_09s0002g04010.t01	Wine grape	plastid	35.24	38.74
Bra021172.1-P	Field mustard	plastid	37.14	38.24
CDX97734	Canola	plastid	37.14	38.24
Bra027180.1-P	Field mustard	plastid	37.14	38.24
AT3G16250.1	Thale cress	plastid	37.14	38.24
KRH09910	Soybean	plastid	34.76	37.63
CDY20191	Canola	plastid	36.19	37.25
KRH23421	Soybean	mitochondrion, plastid	34.29	37.11
Os05t0555300-01	Rice	plastid	27.62	27.62
CDY30148	Canola	plastid	16.67	24.48

Protein Annotations

MapMan:1.1.8.1.3.3	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	EntrezGene:4343262	EMBL:AK068191
ProteinID:BAC80058.1	ProteinID:BAF21583.1	ProteinID:BAT01543.1	InterPro:Beta-grasp_dom_sf	ProteinID:EAZ39849.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009773	GO:GO:0009987	GO:GO:0010598	GO:GO:0015979
GO:GO:0016020	GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675	EnsemblPlantsGene:Os07g0489800	EnsemblPlants:Os07t0489800-01
PFAM:PF00111	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	UniProt:Q7XHS1	SUPFAM:SSF54292	UniParc:UPI00001B3B19
RefSeq:XP_015645759.1	SEG:seg	:	:	:	:

Description

Beta-grasp fold, ferredoxin-type domain containing protein. (Os07t0489800-01)

Coordinates

chr7:+:18149111..18150695

Molecular Weight (calculated)

22630.2 Da

IEP (calculated)

7.609

GRAVY (calculated)

-0.294

Length

210 amino acids

Sequence
(BLAST)

001: MGATMQLVVG LAGVASSSPR LAPHCAVATA TTTSSCSVRK QSCSCCGAAH LPRRLQHKQQ RRCGIRVRAV ETDAAAGGEA KAAPEEPPSV DFAFVAPRLL
101: PDGTPDVHYR TACGGQKLRD IMLDNYIDLY GPYDKLLLNC EGGGECGTCI VEVVEGGELL SPKTDVEKEL LKRKPKTWRL ACQATVGNPD STGQMVIQQL
201: PEWKIHEWDK

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.