Factsheet for VIT_09s0002g04010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT3G16250.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63822	Canola	cytosol	38.74	64.35
KRH23421	Soybean	mitochondrion, plastid	61.78	60.82
KRH09910	Soybean	plastid	61.26	60.31
Bra021172.1-P	Field mustard	plastid	58.64	54.9
CDX97734	Canola	plastid	58.64	54.9
Bra027180.1-P	Field mustard	plastid	58.64	54.9
CDY20191	Canola	plastid	58.12	54.41
AT3G16250.1	Thale cress	plastid	57.07	53.43
CDY30147	Canola	mitochondrion	26.7	51.0
CDY30148	Canola	plastid	34.03	45.45
GSMUA_Achr11P...	Banana	plastid	42.93	43.62
TraesCS7D01G103500.1	Wheat	plastid	37.7	37.89
Zm00001d021515_P001	Maize	plastid	37.7	37.7
HORVU7Hr1G023140.1	Barley	plastid	38.74	37.56
EER97233	Sorghum	plastid	37.7	36.92
TraesCS7A01G108600.1	Wheat	plastid	37.17	36.41
TraesCS7B01G006600.1	Wheat	plastid	36.65	35.71
Os07t0489800-01	Rice	plastid	38.74	35.24
PGSC0003DMT400031868	Potato	plastid	36.65	34.83
Zm00001d006398_P001	Maize	plastid	34.55	33.17
VIT_04s0008g04240.t01	Wine grape	extracellular	29.84	33.14
Solyc08g083360.2.1	Tomato	nucleus	32.98	32.81

Protein Annotations

MapMan:1.1.8.1.3.3	EntrezGene:100241139	wikigene:100241139	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30
EMBL:AM464761	InterPro:Beta-grasp_dom_sf	ProteinID:CAN70335	ProteinID:CAN70335.1	ProteinID:CBI36102	ProteinID:CBI36102.3
UniProt:D7U0F6	EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900	GO:GO:0051536
InterPro:IPR001041	InterPro:IPR012675	EntrezGene:LOC100241139	wikigene:LOC100241139	PFAM:PF00111	PANTHER:PTHR23426
PANTHER:PTHR23426:SF27	SUPFAM:SSF54292	UniParc:UPI00015C8776	ArrayExpress:VIT_09s0002g04010	EnsemblPlantsGene:VIT_09s0002g04010	EnsemblPlants:VIT_09s0002g04010.t01
unigene:Vvi.22499	RefSeq:XP_002284206	RefSeq:XP_002284206.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:3709751..3711387

Molecular Weight (calculated)

20994.0 Da

IEP (calculated)

8.478

GRAVY (calculated)

-0.532

Length

191 amino acids

Sequence
(BLAST)

001: MGTLQLNSYG LSSFSLTQNF TSKTHKTLKP FNPPSSSRPK IKAIGTIPES QSQATPSDEP PSVNFAFVNS VLLPDGTPDV HFRSACGGQK LRDIMLDSNI
101: DLYGPYARPL LNCGGGGTCG TCIVEVIEGK DLLTPRTDKE KEKLKRNPKT WRLACQTTVG KADSRGLVVI QQLPEWKAHE WTYEKELPSE T

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.