CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	CDY36901	AT3G48150.1	21798944
AT3G16250.1	CDY44976	AT3G48150.1	21798944
AT3G16250.1	CDY58069	AT3G48150.1	21798944
AT3G16250.1	CDY58070	AT3G48150.1	21798944
AT3G16250.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021172.1-P	Field mustard	plastid	82.61	46.57
AT3G16250.1	Thale cress	plastid	81.74	46.08
CDX97734	Canola	plastid	81.74	46.08
CDY20191	Canola	plastid	81.74	46.08
CDY30147	Canola	mitochondrion	37.39	43.0
VIT_09s0002g04010.t01	Wine grape	plastid	64.35	38.74
KRH09910	Soybean	plastid	65.22	38.66
CDY30148	Canola	plastid	47.83	38.46
KRH23421	Soybean	mitochondrion, plastid	63.48	37.63
GSMUA_Achr11P...	Banana	plastid	41.74	25.53
CDX68864	Canola	plastid	36.52	25.3
EER97233	Sorghum	plastid	41.74	24.62
Zm00001d021515_P001	Maize	plastid	40.87	24.61
TraesCS7D01G103500.1	Wheat	plastid	40.0	24.21
TraesCS7A01G108600.1	Wheat	plastid	40.87	24.1
TraesCS7B01G006600.1	Wheat	plastid	40.87	23.98
CDX75257	Canola	plastid	34.78	23.67
HORVU7Hr1G023140.1	Barley	plastid	40.0	23.35
Zm00001d006398_P001	Maize	plastid	40.0	23.12
Os07t0489800-01	Rice	plastid	41.74	22.86
Solyc08g083360.2.1	Tomato	nucleus	33.04	19.79
PGSC0003DMT400031868	Potato	plastid	33.04	18.91

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	GO:A0A078JCN4	UniProt:A0A078JCN4
InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDY63822	ProteinID:CDY63822	ProteinID:CDY63822.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0022900	GO:GO:0051536	EnsemblPlantsGene:GSBRNA2T00039659001	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111
PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	SUPFAM:SSF54292	UniParc:UPI0004EE2D68	:	:

Description

BnaC01g44590DBnaC01g44590D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JCN4]

Coordinates

chrLK034355:-:30571..32169

Molecular Weight (calculated)

12942.6 Da

IEP (calculated)

9.043

GRAVY (calculated)

-0.613

Length

115 amino acids

Sequence
(BLAST)

001: SVLLPDGTPD VHWRRACGGQ KLRDIMLDSN IELYGPYSKP LSNCAGVGTC ATCMVEIVNG KELLNPRTDI EKEKLKRKPK NWRLACQTNV GNPDFNRIGR
101: HTTIARVESS RMEYP

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.