Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY44976 | Canola | cytosol | 96.01 | 95.25 |
CDY58070 | Canola | cytosol | 87.62 | 88.69 |
CDY70805 | Canola | nucleus | 52.49 | 87.38 |
Bra018081.1-P | Field mustard | cytosol | 95.61 | 82.73 |
AT3G48150.1 | Thale cress | cytosol | 91.62 | 79.27 |
CDY58069 | Canola | nucleus | 58.08 | 65.25 |
VIT_07s0130g00490.t01 | Wine grape | cytosol | 75.05 | 65.16 |
VIT_07s0031g02330.t01 | Wine grape | cytosol | 74.05 | 64.3 |
Solyc03g113740.2.1 | Tomato | cytosol, mitochondrion | 72.06 | 62.67 |
PGSC0003DMT400063189 | Potato | cytosol | 67.86 | 62.5 |
KRH27971 | Soybean | nucleus | 71.06 | 61.7 |
KRH77487 | Soybean | nucleus | 70.26 | 60.9 |
KRH24006 | Soybean | cytosol | 70.26 | 59.76 |
KRH29310 | Soybean | cytosol | 35.53 | 55.62 |
Os06t0679100-00 | Rice | plastid | 18.96 | 53.37 |
EES07517 | Sorghum | cytosol | 62.28 | 52.0 |
GSMUA_Achr11P... | Banana | cytosol | 62.08 | 51.49 |
Zm00001d017475_P002 | Maize | cytosol | 61.08 | 51.09 |
TraesCS6A01G251400.1 | Wheat | cytosol | 60.88 | 50.92 |
TraesCS6B01G273900.1 | Wheat | cytosol | 60.88 | 50.92 |
TraesCS6D01G233200.1 | Wheat | cytosol | 60.68 | 50.75 |
Os02t0656300-01 | Rice | cytosol | 60.08 | 50.42 |
HORVU6Hr1G062870.1 | Barley | cytosol, plastid | 60.68 | 46.84 |
HORVU0Hr1G027080.4 | Barley | plastid | 55.29 | 46.17 |
CDX97740 | Canola | cytosol | 14.17 | 9.96 |
CDY30158 | Canola | cytosol | 14.17 | 9.94 |
CDY35917 | Canola | cytosol | 13.97 | 9.42 |
CDY40468 | Canola | cytosol | 13.97 | 9.41 |
CDY35918 | Canola | cytosol | 3.19 | 6.45 |
Protein Annotations
Gene3D:1.25.40.10 | MapMan:35.1 | GO:A0A078HGK4 | UniProt:A0A078HGK4 | InterPro:APC8 | EnsemblPlants:CDY36901 |
ProteinID:CDY36901 | ProteinID:CDY36901.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 | GO:GO:0007049 |
GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030071 | EnsemblPlantsGene:GSBRNA2T00063032001 | InterPro:IPR011990 |
InterPro:IPR013026 | InterPro:IPR019734 | PFAM:PF04049 | PFAM:PF13176 | PFscan:PS50005 | PFscan:PS50293 |
PANTHER:PTHR12558 | PANTHER:PTHR12558:SF10 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
InterPro:TPR_repeat | UniPathway:UPA00143 | UniParc:UPI0004EEE4D4 | SEG:seg | : | : |
Description
BnaA06g16860DBnaA06g16860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGK4]
Coordinates
chrLK032387:+:18608..21252
Molecular Weight (calculated)
57833.7 Da
IEP (calculated)
5.332
GRAVY (calculated)
-0.455
Length
501 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSKESCRNE IRAAIGQLSE RCLHSAAKWA GEQLVGIEQD PSNFTPSNTR FQRGSSSIRR RFSTNESIST PQPSVGFSQA ATPLPEEDEV IDGDLYHLAK
101: SYFNCREYRR ASHVLRDQMS KKSVFLRCYS LYLAGEKRKE EEMIELEGSL GKSDAINREL VSLERELSAL KRTGAIDSFG LYLYGVVLKE KGNETLARAS
201: LVESVNSYPW NWNAWSELQS LCTSIEILNS LNLSNHWMKE FFLASAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEDLLRN
301: DPYRVEDMDL YSNVLYAKEA SVDINPCDYR AWYGLGQAYE MMGMPFYALH YFRKSIFFLP NDSRLWIAMA KCYQTEQIYM LEEAIKCYKR AVSCTDTEGI
401: ALNQLAKLHQ KLGRDEEAAV YFEKDVERMD SEGLEGPNML EALVFLATHF KTHKKFEEAE VYCTRILDYS GPEKEKAKSL LRGIRMEKTG FPSMDMEHFP
501: L
101: SYFNCREYRR ASHVLRDQMS KKSVFLRCYS LYLAGEKRKE EEMIELEGSL GKSDAINREL VSLERELSAL KRTGAIDSFG LYLYGVVLKE KGNETLARAS
201: LVESVNSYPW NWNAWSELQS LCTSIEILNS LNLSNHWMKE FFLASAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEDLLRN
301: DPYRVEDMDL YSNVLYAKEA SVDINPCDYR AWYGLGQAYE MMGMPFYALH YFRKSIFFLP NDSRLWIAMA KCYQTEQIYM LEEAIKCYKR AVSCTDTEGI
401: ALNQLAKLHQ KLGRDEEAAV YFEKDVERMD SEGLEGPNML EALVFLATHF KTHKKFEEAE VYCTRILDYS GPEKEKAKSL LRGIRMEKTG FPSMDMEHFP
501: L
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.