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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G48150.1 CDY21916 AT1G03130.1 21798944
AT3G48150.1 CDY22079 AT1G03130.1 21798944
AT3G48150.1 CDY06219 AT1G06590.1 20706207
AT3G48150.1 CDY06653 AT1G06590.1 20706207
AT3G48150.1 CDY09966 AT1G06590.1 20706207
AT3G48150.1 CDY10211 AT1G06590.1 20706207
AT3G48150.1 CDY36540 AT1G15260.1 21798944
AT3G48150.1 CDY39626 AT1G15260.1 21798944
AT3G48150.1 CDY16531 AT1G49850.1 21798944
AT3G48150.1 CDY20854 AT1G49850.1 21798944
AT3G48150.1 CDY32837 AT1G49850.1 21798944
AT3G48150.1 CDY61552 AT1G49850.1 21798944
AT3G48150.1 CDX68291 AT1G71970.1 21798944
AT3G48150.1 CDX72851 AT1G71970.1 21798944
AT3G48150.1 CDX82197 AT1G71970.1 21798944
AT3G48150.1 CDX96367 AT1G71970.1 21798944
AT3G48150.1 CDY03667 AT1G71970.1 21798944
AT3G48150.1 CDY36668 AT1G71970.1 21798944
AT3G48150.1 CDX68289 AT1G72030.1 21798944
AT3G48150.1 CDY36666 AT1G72030.1 21798944
AT3G48150.1 CDX87519 AT1G77400.1 21798944
AT3G48150.1 CDX88369 AT1G77400.1 21798944
AT3G48150.1 CDY38350 AT1G77400.1 21798944
AT3G48150.1 CDY40887 AT1G77400.1 21798944
AT3G48150.1 CDY41785 AT1G77400.1 21798944
AT3G48150.1 CDX87437 AT1G78770.1 20706207
AT3G48150.1 CDX88475 AT1G78770.1 20706207
AT3G48150.1 CDY10563 AT1G78770.1 20706207
AT3G48150.1 CDY04835 AT2G04660.1 14508008
AT3G48150.1 CDY30292 AT2G04660.1 14508008
AT3G48150.1 CDY30835 AT2G04660.1 14508008
AT3G48150.1 CDY04295 AT2G05830.1 20706207
AT3G48150.1 CDY09484 AT2G05830.1 20706207
AT3G48150.1 CDY33397 AT2G05830.1 20706207
AT3G48150.1 CDY70356 AT2G05830.1 20706207
AT3G48150.1 CDY07811 AT2G17880.1 21798944
AT3G48150.1 CDY26834 AT2G17880.1 21798944
AT3G48150.1 CDY29205 AT2G17880.1 21798944
AT3G48150.1 CDY30342 AT2G17880.1 21798944
AT3G48150.1 CDX93287 AT2G39100.1 21798944
AT3G48150.1 CDY18354 AT2G39100.1 21798944
AT3G48150.1 CDY06976 AT2G40590.1 21798944
AT3G48150.1 CDY07599 AT2G40590.1 21798944
AT3G48150.1 CDY24898 AT2G40590.1 21798944
AT3G48150.1 CDX79885 AT2G42260.1 20706207
AT3G48150.1 CDY53501 AT2G42260.1 20706207
AT3G48150.1 CDX83484 AT2G43370.1 21798944
AT3G48150.1 CDY14697 AT2G43370.1 21798944
AT3G48150.1 CDY22251 AT2G43370.1 21798944
AT3G48150.1 CDY23361 AT2G43370.1 21798944
AT3G48150.1 CDY44222 AT2G43370.1 21798944
AT3G48150.1 CDX80039 AT2G46690.1 21798944
AT3G48150.1 CDY41548 AT2G46690.1 21798944
AT3G48150.1 CDY48020 AT2G46690.1 21798944
AT3G48150.1 CDX75702 AT3G13310.1 21798944
AT3G48150.1 CDX82546 AT3G13310.1 21798944
AT3G48150.1 CDY23588 AT3G13310.1 21798944
AT3G48150.1 CDY24196 AT3G13310.1 21798944
AT3G48150.1 CDY43357 AT3G13310.1 21798944
AT3G48150.1 CDY44009 AT3G13310.1 21798944
AT3G48150.1 CDX75812 AT3G15160.1 21798944
AT3G48150.1 CDX82445 AT3G15160.1 21798944
AT3G48150.1 CDX75826 AT3G15360.1 21798944
AT3G48150.1 CDX82437 AT3G15360.1 21798944
AT3G48150.1 CDY46888 AT3G17668.1 21798944
AT3G48150.1 CDX67904 AT3G62790.1 21798944
AT3G48150.1 CDX76662 AT3G62790.1 21798944
AT3G48150.1 CDY11448 AT3G62790.1 21798944
AT3G48150.1 CDY25118 AT3G62790.1 21798944
AT3G48150.1 CDX79070 AT4G21530.1 20706207
AT3G48150.1 CDX82833 AT4G21530.1 20706207
AT3G48150.1 CDY34315 AT4G24820.1 20706207
AT3G48150.1 CDX75458 AT4G34740.1 21798944
AT3G48150.1 CDX69199 AT4G36110.1 21798944
AT3G48150.1 CDX72576 AT4G36110.1 21798944
AT3G48150.1 CDX75553 AT4G36110.1 21798944
AT3G48150.1 CDY08909 AT4G36110.1 21798944
AT3G48150.1 CDY24829 AT4G36110.1 21798944
AT3G48150.1 CDY47053 AT4G36110.1 21798944
AT3G48150.1 CDX69443 AT5G16560.1 21798944
AT3G48150.1 CDX85500 AT5G16560.1 21798944
AT3G48150.1 CDY28659 AT5G16560.1 21798944
AT3G48150.1 CDY38105 AT5G16560.1 21798944
AT3G48150.1 CDY67252 AT5G16560.1 21798944
AT3G48150.1 CDX85342 AT5G48500.1 21798944
AT3G48150.1 CDX86302 AT5G48500.1 21798944
AT3G48150.1 CDY00054 AT5G48500.1 21798944
AT3G48150.1 CDY19944 AT5G48500.1 21798944
AT3G48150.1 CDY48761 AT5G48500.1 21798944
AT3G48150.1 CDY68652 AT5G48500.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44976 Canola cytosol 96.01 95.25
CDY58070 Canola cytosol 87.62 88.69
CDY70805 Canola nucleus 52.49 87.38
Bra018081.1-P Field mustard cytosol 95.61 82.73
AT3G48150.1 Thale cress cytosol 91.62 79.27
CDY58069 Canola nucleus 58.08 65.25
VIT_07s0130g00490.t01 Wine grape cytosol 75.05 65.16
VIT_07s0031g02330.t01 Wine grape cytosol 74.05 64.3
Solyc03g113740.2.1 Tomato cytosol, mitochondrion 72.06 62.67
PGSC0003DMT400063189 Potato cytosol 67.86 62.5
KRH27971 Soybean nucleus 71.06 61.7
KRH77487 Soybean nucleus 70.26 60.9
KRH24006 Soybean cytosol 70.26 59.76
KRH29310 Soybean cytosol 35.53 55.62
Os06t0679100-00 Rice plastid 18.96 53.37
EES07517 Sorghum cytosol 62.28 52.0
GSMUA_Achr11P... Banana cytosol 62.08 51.49
Zm00001d017475_P002 Maize cytosol 61.08 51.09
TraesCS6A01G251400.1 Wheat cytosol 60.88 50.92
TraesCS6B01G273900.1 Wheat cytosol 60.88 50.92
TraesCS6D01G233200.1 Wheat cytosol 60.68 50.75
Os02t0656300-01 Rice cytosol 60.08 50.42
HORVU6Hr1G062870.1 Barley cytosol, plastid 60.68 46.84
HORVU0Hr1G027080.4 Barley plastid 55.29 46.17
CDX97740 Canola cytosol 14.17 9.96
CDY30158 Canola cytosol 14.17 9.94
CDY35917 Canola cytosol 13.97 9.42
CDY40468 Canola cytosol 13.97 9.41
CDY35918 Canola cytosol 3.19 6.45
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1GO:A0A078HGK4UniProt:A0A078HGK4InterPro:APC8EnsemblPlants:CDY36901
ProteinID:CDY36901ProteinID:CDY36901.1ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005680GO:GO:0007049
GO:GO:0008150GO:GO:0009987GO:GO:0016043GO:GO:0030071EnsemblPlantsGene:GSBRNA2T00063032001InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734PFAM:PF04049PFAM:PF13176PFscan:PS50005PFscan:PS50293
PANTHER:PTHR12558PANTHER:PTHR12558:SF10SMART:SM00028SUPFAM:SSF48452InterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeatUniPathway:UPA00143UniParc:UPI0004EEE4D4SEG:seg::
Description
BnaA06g16860DBnaA06g16860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGK4]
Coordinates
chrLK032387:+:18608..21252
Molecular Weight (calculated)
57833.7 Da
IEP (calculated)
5.332
GRAVY (calculated)
-0.455
Length
501 amino acids
Sequence
(BLAST)
001: MVSKESCRNE IRAAIGQLSE RCLHSAAKWA GEQLVGIEQD PSNFTPSNTR FQRGSSSIRR RFSTNESIST PQPSVGFSQA ATPLPEEDEV IDGDLYHLAK
101: SYFNCREYRR ASHVLRDQMS KKSVFLRCYS LYLAGEKRKE EEMIELEGSL GKSDAINREL VSLERELSAL KRTGAIDSFG LYLYGVVLKE KGNETLARAS
201: LVESVNSYPW NWNAWSELQS LCTSIEILNS LNLSNHWMKE FFLASAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEDLLRN
301: DPYRVEDMDL YSNVLYAKEA SVDINPCDYR AWYGLGQAYE MMGMPFYALH YFRKSIFFLP NDSRLWIAMA KCYQTEQIYM LEEAIKCYKR AVSCTDTEGI
401: ALNQLAKLHQ KLGRDEEAAV YFEKDVERMD SEGLEGPNML EALVFLATHF KTHKKFEEAE VYCTRILDYS GPEKEKAKSL LRGIRMEKTG FPSMDMEHFP
501: L
Best Arabidopsis Sequence Match ( AT3G48150.1 )
(BLAST)
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.