Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38105 | Canola | nucleus | 95.99 | 96.23 |
| CDX70701 | Canola | nucleus | 83.46 | 86.49 |
| CDY67252 | Canola | nucleus | 84.96 | 86.04 |
| CDX78699 | Canola | nucleus | 83.21 | 86.01 |
| CDX69443 | Canola | nucleus | 84.46 | 85.75 |
| AT5G16560.1 | Thale cress | nucleus | 82.71 | 81.89 |
| CDY28659 | Canola | nucleus | 61.9 | 80.98 |
| Bra023570.1-P | Field mustard | cytosol | 75.69 | 75.88 |
| CDY71094 | Canola | mitochondrion | 10.28 | 51.25 |
| CDY69225 | Canola | mitochondrion | 19.8 | 47.88 |
| Solyc06g066340.2.1 | Tomato | nucleus | 29.82 | 40.89 |
| CDY23916 | Canola | nucleus | 26.57 | 39.85 |
| VIT_04s0043g00340.t01 | Wine grape | nucleus | 45.61 | 38.97 |
| CDY68011 | Canola | nucleus | 20.3 | 38.39 |
| CDY35557 | Canola | nucleus | 32.08 | 38.32 |
| CDX93847 | Canola | nucleus | 32.33 | 38.17 |
| CDX84102 | Canola | nucleus | 25.56 | 37.64 |
| CDY43006 | Canola | nucleus | 31.83 | 37.35 |
| CDY01293 | Canola | nucleus | 32.33 | 37.28 |
| PGSC0003DMT400043200 | Potato | nucleus | 34.34 | 34.42 |
| CDX78794 | Canola | nucleus | 26.57 | 33.97 |
| GSMUA_Achr4P04510_001 | Banana | nucleus | 31.58 | 33.6 |
| Os08t0426866-00 | Rice | nucleus | 37.84 | 32.27 |
| CDY54255 | Canola | nucleus | 23.81 | 31.77 |
| KRH39002 | Soybean | nucleus | 32.33 | 31.31 |
| KRH48713 | Soybean | nucleus | 32.33 | 31.01 |
| KXG25180 | Sorghum | nucleus | 36.34 | 30.53 |
| Zm00001d032249_P002 | Maize | plastid | 34.09 | 28.22 |
| CDY00733 | Canola | mitochondrion, nucleus | 9.27 | 26.06 |
| CDY16660 | Canola | mitochondrion | 11.03 | 25.43 |
| CDX94559 | Canola | mitochondrion | 10.53 | 24.28 |
| CDX97319 | Canola | mitochondrion | 12.03 | 23.19 |
| CDY59419 | Canola | nucleus | 12.28 | 20.42 |
| CDX81654 | Canola | nucleus | 12.28 | 20.25 |
| CDX82805 | Canola | nucleus | 12.28 | 20.25 |
| CDY45272 | Canola | nucleus | 12.53 | 20.24 |
| CDY41090 | Canola | nucleus | 12.53 | 20.24 |
| CDY09392 | Canola | nucleus | 12.78 | 19.47 |
| CDY70922 | Canola | nucleus | 12.53 | 19.3 |
| CDY17443 | Canola | nucleus | 12.03 | 18.18 |
| CDY17617 | Canola | nucleus | 11.78 | 18.08 |
| CDY02401 | Canola | nucleus | 26.82 | 17.15 |
| CDY04115 | Canola | nucleus | 10.78 | 15.87 |
| CDY67147 | Canola | nucleus | 12.28 | 14.98 |
| CDX74898 | Canola | nucleus | 12.78 | 14.91 |
| CDY42825 | Canola | nucleus | 12.03 | 14.68 |
| CDX91442 | Canola | nucleus | 12.78 | 14.57 |
| CDX74803 | Canola | nucleus | 13.78 | 14.32 |
| CDY07612 | Canola | nucleus | 14.04 | 14.29 |
| CDY52431 | Canola | nucleus | 13.78 | 14.14 |
| CDY18860 | Canola | nucleus | 14.04 | 13.76 |
| CDY07070 | Canola | nucleus | 13.53 | 12.98 |
| CDX93206 | Canola | nucleus | 13.53 | 12.92 |
| CDY04116 | Canola | nucleus | 4.26 | 8.37 |
| CDY69675 | Canola | cytosol, nucleus | 1.0 | 3.45 |
Protein Annotations
| EnsemblPlants:CDX85500 | EnsemblPlantsGene:GSBRNA2T00143207001 | Gene3D:1.10.10.60 | GO:A0A078D8G2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Myb_dom_plants | InterPro:SANT/Myb | PANTHER:PTHR31496 |
| PANTHER:PTHR31496:SF3 | PFAM:PF00249 | ProteinID:CDX85500 | ProteinID:CDX85500.1 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | UniParc:UPI0004EE8BC3 | MapMan:15.5.2.3 | : | : | : |
Description
BnaA02g03130D
Coordinates
chrLK031842:+:401801..405860
Molecular Weight (calculated)
45024.0 Da
IEP (calculated)
9.618
GRAVY (calculated)
-0.993
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMEGVFLEK PKSNTTTTLP DLSLNISLPD THHHLRHNEL SRRSSQTDNN RSSNLELSLS HHNNPSSSPS TRILHCPDPR NLNLSHHQHY NNSILNGRSL
101: HQRVDESDIN NIHRPIRGIP VYHNRSFPFH QQTSHSSSLG GGDLDSSSIL NSSSGYNSAY RSLQSSPRLK GVPVHHHNHY GVVGSSDSSS PHHHHHHGMI
201: RSRFLPKMPT KRSMRAPRMR WTSSLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTNKPAAS SDGSGEEEMG INGNEVHHQS
301: STNQREKSDD SSHQEIDFPS TQPRWGNSSR ETWRSSSNCS SDIDTMARTS STPMISHHQR SILLNQEQKS NDQVKRWGDL SCNNPSLEFT LGRPDWHNT
101: HQRVDESDIN NIHRPIRGIP VYHNRSFPFH QQTSHSSSLG GGDLDSSSIL NSSSGYNSAY RSLQSSPRLK GVPVHHHNHY GVVGSSDSSS PHHHHHHGMI
201: RSRFLPKMPT KRSMRAPRMR WTSSLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTNKPAAS SDGSGEEEMG INGNEVHHQS
301: STNQREKSDD SSHQEIDFPS TQPRWGNSSR ETWRSSSNCS SDIDTMARTS STPMISHHQR SILLNQEQKS NDQVKRWGDL SCNNPSLEFT LGRPDWHNT
001: MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRA SWSSTKEVSR SISTQAYSHL GTTHHTKDNE EKEDTNIHLN LDFTLGRPSW GMEYAEPSSD LTLLKC
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRA SWSSTKEVSR SISTQAYSHL GTTHHTKDNE EKEDTNIHLN LDFTLGRPSW GMEYAEPSSD LTLLKC
Arabidopsis Description
KAN4Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.