Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- plastid 2
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27460.1 | CDX70996 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | CDX88802 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | CDX92367 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | CDY67997 | AT5G22310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026347.1-P | Field mustard | cytosol, extracellular, plastid, vacuole | 100.0 | 100.0 |
| CDY29313 | Canola | cytosol, extracellular, plastid, vacuole | 95.09 | 95.34 |
| AT4G27460.1 | Thale cress | plastid | 74.68 | 73.91 |
| CDY53481 | Canola | cytosol | 64.34 | 61.63 |
| CDY66674 | Canola | cytosol | 63.82 | 60.24 |
| CDY28817 | Canola | cytosol | 59.17 | 59.64 |
| CDX96240 | Canola | cytosol | 61.5 | 59.35 |
| KRH22128 | Soybean | plastid | 51.68 | 51.41 |
| KRH27215 | Soybean | cytosol | 51.16 | 50.77 |
| VIT_19s0014g03090.t01 | Wine grape | extracellular, plastid, vacuole | 51.16 | 50.25 |
| PGSC0003DMT400064370 | Potato | cytosol, extracellular, plastid | 49.1 | 47.98 |
| Solyc10g006920.2.1 | Tomato | cytosol, peroxisome, plastid | 48.06 | 46.97 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 44.96 | 44.62 |
| GSMUA_Achr1P17630_001 | Banana | cytosol | 43.67 | 43.33 |
| GSMUA_Achr3P14310_001 | Banana | cytosol | 41.86 | 43.09 |
| GSMUA_Achr2P18550_001 | Banana | cytosol | 43.41 | 43.08 |
| Os10t0499400-01 | Rice | cytosol, endoplasmic reticulum | 30.23 | 41.49 |
| GSMUA_Achr11P... | Banana | cytosol | 40.57 | 40.57 |
| TraesCS1A01G170000.1 | Wheat | plastid | 38.76 | 40.21 |
| TraesCS1B01G187200.1 | Wheat | plastid | 38.5 | 39.95 |
| TraesCS1D01G167600.1 | Wheat | plastid | 38.5 | 39.95 |
| Zm00001d013933_P001 | Maize | cytosol, plastid | 38.5 | 39.84 |
| Zm00001d032560_P001 | Maize | plastid | 37.98 | 39.2 |
| KXG38242 | Sorghum | plastid | 38.5 | 39.11 |
| TraesCS6D01G218300.1 | Wheat | plastid | 35.92 | 36.1 |
| TraesCS6B01G264200.1 | Wheat | plastid | 35.4 | 35.31 |
| HORVU6Hr1G060370.2 | Barley | plastid | 35.92 | 35.19 |
| TraesCS6A01G235600.1 | Wheat | plastid | 35.4 | 35.04 |
| EES05487 | Sorghum | plastid | 35.4 | 33.58 |
| Zm00001d017375_P001 | Maize | plastid | 35.66 | 33.33 |
| TraesCS2A01G586700.1 | Wheat | cytosol, peroxisome, plastid | 32.56 | 33.16 |
| HORVU2Hr1G118660.1 | Barley | cytosol, extracellular, mitochondrion, plastid | 19.12 | 32.89 |
| TraesCSU01G021400.1 | Wheat | cytosol | 31.78 | 32.2 |
| TraesCS2D01G599900.1 | Wheat | cytosol | 31.52 | 31.94 |
| HORVU1Hr1G044960.1 | Barley | mitochondrion, plastid | 37.47 | 30.02 |
| CDY68980 | Canola | cytosol | 26.1 | 23.71 |
| CDY39289 | Canola | cytosol | 25.84 | 23.36 |
| Os04t0679600-01 | Rice | nucleus | 21.45 | 20.54 |
Protein Annotations
| EnsemblPlants:CDX89247 | EnsemblPlantsGene:GSBRNA2T00149447001 | InterPro:CBS_dom | InterPro:IPR000644 | PANTHER:PTHR13780 | PANTHER:PTHR13780:SF55 |
| PFAM:PF00571 | PFscan:PS51371 | ProteinID:CDX89247 | ProteinID:CDX89247.1 | SEG:seg | SUPFAM:SSF54631 |
| UniParc:UPI0002545B14 | MapMan:35.1 | : | : | : | : |
Description
BnaA01g16460D
Coordinates
chrLK031858:-:432503..433830
Molecular Weight (calculated)
41578.8 Da
IEP (calculated)
4.838
GRAVY (calculated)
0.168
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSLLSYDV TDLCLGKPPL RCLSASSSSV SDAIAALKSS DDPFLSVWNC NHDHDDVAEC ECLGKISMAD VICHLSKDEV HTLSALNSPV SVLLPPTRSL
101: VLHVQPSCSL VEAIDLIIQG AHNLIVPIQT KTATKKRQQN DNVSHTTTTT HSNGQRFCWI TQEDIVRFLL GCIAAFSPLP SMSISDLGII NSSHAILAVD
201: YNSSASAVVS AISRALADQT SVAVVDNEGD DSLMYLIGEI SPMTLTCCDE TAAAAVATLS AGYLMEYLDG VNPPESLVQE VRERLESKGQ IGLLSLLDTL
301: SLSSSPTSGY SSDEESPARS LGRSMSISTR MARKAEAVVC NPKSSLMAVM IQAITHRTNY TWVIDKDGCF VGMVTFVDIL KVFRKFL
101: VLHVQPSCSL VEAIDLIIQG AHNLIVPIQT KTATKKRQQN DNVSHTTTTT HSNGQRFCWI TQEDIVRFLL GCIAAFSPLP SMSISDLGII NSSHAILAVD
201: YNSSASAVVS AISRALADQT SVAVVDNEGD DSLMYLIGEI SPMTLTCCDE TAAAAVATLS AGYLMEYLDG VNPPESLVQE VRERLESKGQ IGLLSLLDTL
301: SLSSSPTSGY SSDEESPARS LGRSMSISTR MARKAEAVVC NPKSSLMAVM IQAITHRTNY TWVIDKDGCF VGMVTFVDIL KVFRKFL
001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
Arabidopsis Description
CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.