Factsheet for GSMUA_AchrUn_randomP02550_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT4G27460.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P17630_001	Banana	cytosol	71.54	71.54
GSMUA_Achr3P14310_001	Banana	cytosol	68.46	71.01
GSMUA_Achr2P18550_001	Banana	cytosol	55.13	55.13
GSMUA_Achr11P...	Banana	cytosol	52.31	52.71
KRH27215	Soybean	cytosol	51.79	51.79
KRH22128	Soybean	plastid	50.77	50.9
VIT_00s0587g00030.t01	Wine grape	cytosol	49.74	50.52
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	50.77	50.25
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	49.49	48.74
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	49.23	48.48
Solyc02g078480.2.1	Tomato	cytosol	47.44	45.68
PGSC0003DMT400057642	Potato	cytosol	47.18	45.66
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	44.62	44.96
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	44.62	44.96
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	44.1	44.56
PGSC0003DMT400033347	Potato	cytosol	45.38	44.36
AT4G27460.1	Thale cress	plastid	44.36	44.25
PGSC0003DMT400058761	Potato	mitochondrion	44.36	44.02
KRH10848	Soybean	cytosol	42.82	43.83
CDY53481	Canola	cytosol	45.38	43.81
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	42.56	43.68
KRH21471	Soybean	cytosol	44.36	43.47
CDY66674	Canola	cytosol	45.64	43.41
TraesCS2D01G599900.1	Wheat	cytosol	42.31	43.19
Solyc10g009010.2.1	Tomato	cytosol	43.33	43.0
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	24.62	42.67
TraesCSU01G021400.1	Wheat	cytosol	41.54	42.41
AT5G53750.1	Thale cress	cytosol	44.36	42.4
Solyc03g006470.2.1	Tomato	cytosol	43.08	42.0
CDY28817	Canola	cytosol	41.03	41.67
CDX96240	Canola	cytosol	42.56	41.4
Bra022672.1-P	Field mustard	cytosol	38.21	40.05
Bra029056.1-P	Field mustard	cytosol	43.08	35.44
Os04t0679600-01	Rice	nucleus	28.46	27.48
GSMUA_Achr10P...	Banana	cytosol	23.85	24.54
GSMUA_AchrUn_...	Banana	cytosol	25.9	22.85
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	23.85	21.58

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP02550_001	EnsemblPlants:GSMUA_AchrUn_randomT02550_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG02550_001	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF55	PFAM:PF00571	PFscan:PS51371	SEG:seg	SUPFAM:SSF54631	UniParc:UPI0002964BD5
UniProt:M0U5R7	MapMan:35.1	:	:	:	:

Description

cystathionin beta synthase protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG02550_001]

Coordinates

chrchrUn_random:-:12630485..12631887

Molecular Weight (calculated)

40922.3 Da

IEP (calculated)

5.250

GRAVY (calculated)

0.302

Length

390 amino acids

Sequence
(BLAST)

001: MAVSSLAREV SDLCIGKPAV RSLPLSATIG DALIALRSSG EDRLAVWAAD RNRPDRKACV GTVCMVDIVC YLCSKENIAA PGAALAAPVS VILPPKAAAP
101: LVRRVEPSSS ILEALDAILE GAQSLVVPLR PAASRRKPAG GGGAALEFCW LTQEDLVRFF LNSIALFSPA PALSVTDLGL VHPAPLAVRP QDPALSALPL
201: IRAALVDQTS VAVVSDDGRL LGEISPSTLV HCDQRVAAAL AALSAGDLMA YVDCFGAPPE SAIGAIKARL QEKGLLSMLE LLEADFSPPF LSSASSSSSS
301: SSSDEESSPA AALQRPRRLR SAGRSGSYSA RMGRRSEEAI VCHPESSLVA VMIQALTHRV SYVWVVNDDY FLVGIVAFSD ILSVFREQLD

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.