Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28817 | Canola | cytosol | 90.86 | 88.02 |
| AT5G53750.1 | Thale cress | cytosol | 72.31 | 65.93 |
| Bra029056.1-P | Field mustard | cytosol | 78.23 | 61.39 |
| Bra026347.1-P | Field mustard | cytosol, extracellular, plastid, vacuole | 57.53 | 55.3 |
| KRH22128 | Soybean | plastid | 48.12 | 46.02 |
| KRH27215 | Soybean | cytosol | 47.04 | 44.87 |
| PGSC0003DMT400064370 | Potato | cytosol, extracellular, plastid | 46.77 | 43.94 |
| VIT_19s0014g03090.t01 | Wine grape | extracellular, plastid, vacuole | 45.7 | 43.15 |
| Solyc10g006920.2.1 | Tomato | cytosol, peroxisome, plastid | 45.7 | 42.93 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 40.05 | 38.21 |
| GSMUA_Achr3P14310_001 | Banana | cytosol | 37.37 | 36.97 |
| GSMUA_Achr1P17630_001 | Banana | cytosol | 37.63 | 35.9 |
| GSMUA_Achr2P18550_001 | Banana | cytosol | 36.83 | 35.13 |
| GSMUA_Achr11P... | Banana | cytosol | 35.22 | 33.85 |
| Zm00001d032560_P001 | Maize | plastid | 33.6 | 33.33 |
| TraesCS1B01G187200.1 | Wheat | plastid | 33.33 | 33.24 |
| Zm00001d013933_P001 | Maize | cytosol, plastid | 33.33 | 33.16 |
| KXG38242 | Sorghum | plastid | 33.87 | 33.07 |
| Os10t0499400-01 | Rice | cytosol, endoplasmic reticulum | 25.0 | 32.98 |
| TraesCS1A01G170000.1 | Wheat | plastid | 33.06 | 32.98 |
| TraesCS1D01G167600.1 | Wheat | plastid | 33.06 | 32.98 |
| TraesCS6D01G218300.1 | Wheat | plastid | 33.06 | 31.95 |
| TraesCS6B01G264200.1 | Wheat | plastid | 32.53 | 31.19 |
| HORVU6Hr1G060370.2 | Barley | plastid | 33.06 | 31.14 |
| TraesCS6A01G235600.1 | Wheat | plastid | 31.99 | 30.43 |
| TraesCSU01G021400.1 | Wheat | cytosol | 30.65 | 29.84 |
| EES05487 | Sorghum | plastid | 32.53 | 29.66 |
| TraesCS2A01G586700.1 | Wheat | cytosol, peroxisome, plastid | 30.11 | 29.47 |
| TraesCS2D01G599900.1 | Wheat | cytosol | 29.84 | 29.06 |
| Zm00001d017375_P001 | Maize | plastid | 32.26 | 28.99 |
| HORVU2Hr1G118660.1 | Barley | cytosol, extracellular, mitochondrion, plastid | 17.47 | 28.89 |
| HORVU1Hr1G044960.1 | Barley | mitochondrion, plastid | 32.26 | 24.84 |
| Bra004113.1-P | Field mustard | plastid | 21.24 | 18.2 |
| Os04t0679600-01 | Rice | nucleus | 18.01 | 16.58 |
Protein Annotations
Description
AT5G53750 (E=2e-110) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT4G27460.1); Has 79 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA02:-:8121283..8122592
Molecular Weight (calculated)
39640.8 Da
IEP (calculated)
6.598
GRAVY (calculated)
0.261
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MAITLLSHEV SDLCIGKPPL RCLSAVTATV ADAIAALKSS DDPFLSVWSC NHDETNDDDD NKKCDCECLG KICMADVICY LSKFDNKVLS LSSAFNASVS
101: VLLPKCRSIV VHVQSSCKLA KAIDLITGGA QNLIVPIQTK RGQHKVPTRN AVVSLTTTTT THKNSRQFCW ITQEDIITFF LGSISVFSPL TSMSISELGV
201: INSTRAFLAV DYYSSAASAI TAISLAIANN ISVLVVDGGC DVLEYPRIAL IGEILPMTLA CCDETAAAAV ATLSAGELMT YIEGSGPLES HVRVVRNRLE
301: EKGMVGLISL VDSLSGSSSS DEESPTGRTK SYGRSVSRAA RMARKSVAIV CNRESSLMAV MIQAIAHRSI FG
101: VLLPKCRSIV VHVQSSCKLA KAIDLITGGA QNLIVPIQTK RGQHKVPTRN AVVSLTTTTT THKNSRQFCW ITQEDIITFF LGSISVFSPL TSMSISELGV
201: INSTRAFLAV DYYSSAASAI TAISLAIANN ISVLVVDGGC DVLEYPRIAL IGEILPMTLA CCDETAAAAV ATLSAGELMT YIEGSGPLES HVRVVRNRLE
301: EKGMVGLISL VDSLSGSSSS DEESPTGRTK SYGRSVSRAA RMARKSVAIV CNRESSLMAV MIQAIAHRSI FG
001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN
Arabidopsis Description
CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.