CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EES11990
KXG30263

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	EES11990	AT5G22310.1	21798944
AT4G27460.1	KXG30263	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017375_P001	Maize	plastid	81.62	80.43
TraesCS6D01G218300.1	Wheat	plastid	65.44	69.35
TraesCS6A01G235600.1	Wheat	plastid	64.95	67.77
TraesCS6B01G264200.1	Wheat	plastid	64.22	67.53
HORVU6Hr1G060370.2	Barley	plastid	64.71	66.84
KXG38242	Sorghum	plastid	44.36	47.51
GSMUA_Achr2P18550_001	Banana	cytosol	45.34	47.44
GSMUA_Achr11P...	Banana	cytosol	41.67	43.93
VIT_00s0587g00030.t01	Wine grape	cytosol	37.01	39.32
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	36.76	38.07
KRH27215	Soybean	cytosol	36.03	37.69
KRH22128	Soybean	plastid	35.05	36.76
KRH10848	Soybean	cytosol	33.33	35.7
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	33.58	35.49
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	33.58	35.4
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	33.58	35.4
CDY53481	Canola	cytosol	35.05	35.4
CDY66674	Canola	cytosol	35.54	35.37
AT4G27460.1	Thale cress	plastid	33.82	35.29
KRH21471	Soybean	cytosol	34.31	35.18
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	33.82	34.85
PGSC0003DMT400033347	Potato	cytosol	34.07	34.84
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	33.58	34.6
Solyc02g078480.2.1	Tomato	cytosol	34.31	34.57
CDX96240	Canola	cytosol	33.82	34.41
CDY28817	Canola	cytosol	32.35	34.38
AT5G53750.1	Thale cress	cytosol	34.31	34.31
PGSC0003DMT400057642	Potato	cytosol	33.82	34.24
PGSC0003DMT400058761	Potato	mitochondrion	32.6	33.84
Solyc10g009010.2.1	Tomato	cytosol	32.35	33.59
Solyc03g006470.2.1	Tomato	cytosol	32.11	32.75
Bra022672.1-P	Field mustard	cytosol	29.66	32.53
Bra029056.1-P	Field mustard	cytosol	34.07	29.32
EES04112	Sorghum	cytosol	24.02	23.96
EES14199	Sorghum	plastid	23.04	23.68

Protein Annotations

EnsemblPlants:EES05487	EnsemblPlantsGene:SORBI_3004G227800	EntrezGene:8074806	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF56	PFAM:PF00571	PFscan:PS51371	ProteinID:EES05487	ProteinID:EES05487.1	RefSeq:XP_002452511.1
SEG:seg	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0001A85599	UniProt:C5XY98	MapMan:35.1

Description

hypothetical protein

Coordinates

chr4:+:57741468..57743750

Molecular Weight (calculated)

42135.6 Da

IEP (calculated)

5.875

GRAVY (calculated)

0.394

Length

408 amino acids

Sequence
(BLAST)

001: MAATLLSHVV SDLCIGKPRV LSLPPSTPVA AALAALRAGA GADPFVFVDA EPAAACRAKT TTVYVKVSVA DILCYLCGDA GNLSDPAAAL GRPVAVVAAA
101: VAGVHGVTHR VDPQTRLLDA IDVLLTDGCQ GLLVPLPAAR ARKRHHQAPS SDAADCCCVL TREDIVRHLF GSISHFAPVA ALTVTSLGLV RRDVHAVHVD
201: DDGLDVIPLL RRAVSDGTAV AVVADDDCAL VGEICPGVLA SCDVETVSAA FAALSAADTM AYIDCSLSHS PPEFLVRAIR AQLAGKGLEA MAELMECAGN
301: DAASIPLSSS SSLSSTSSSD EDSPSLGRAR RPRRMSSGSF GWRSTEDVVA CHSGSSLVAV MAQALAHRVG YVWVVDETSG ALVGVVRFAD VLAVLREHLL
401: PQSQVLCR

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.