CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
extracellular 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25284
KRH30384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	KRH25284	AT5G22310.1	21798944
AT4G27460.1	KRH30384	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22128	Soybean	plastid	92.56	92.8
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	63.33	62.69
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	63.59	62.63
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	63.33	62.37
GSMUA_AchrUn_...	Banana	cytosol, plastid	51.79	51.79
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	50.77	51.3
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	50.77	51.16
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	50.77	51.16
CDY53481	Canola	cytosol	52.05	50.25
AT4G27460.1	Thale cress	plastid	50.0	49.87
CDY66674	Canola	cytosol	52.05	49.51
KRH10848	Soybean	cytosol	48.21	49.34
GSMUA_Achr3P14310_001	Banana	cytosol	47.44	49.2
KRH21471	Soybean	cytosol	50.0	48.99
AT5G53750.1	Thale cress	cytosol	51.03	48.77
GSMUA_Achr1P17630_001	Banana	cytosol	48.72	48.72
CDY28817	Canola	cytosol	46.92	47.66
CDX96240	Canola	cytosol	48.46	47.13
Bra022672.1-P	Field mustard	cytosol	44.87	47.04
GSMUA_Achr2P18550_001	Banana	cytosol	46.41	46.41
GSMUA_Achr11P...	Banana	cytosol	45.13	45.48
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	32.56	45.04
Zm00001d013933_P001	Maize	cytosol, plastid	42.56	44.38
Zm00001d032560_P001	Maize	plastid	42.56	44.27
KXG38242	Sorghum	plastid	42.82	43.83
TraesCS1D01G167600.1	Wheat	plastid	41.79	43.7
TraesCS1A01G170000.1	Wheat	plastid	41.54	43.43
TraesCS1B01G187200.1	Wheat	plastid	41.54	43.43
Bra029056.1-P	Field mustard	cytosol	50.26	41.35
TraesCS6D01G218300.1	Wheat	plastid	37.69	38.18
TraesCS6B01G264200.1	Wheat	plastid	37.18	37.37
HORVU6Hr1G060370.2	Barley	plastid	37.69	37.22
TraesCS6A01G235600.1	Wheat	plastid	36.92	36.83
EES05487	Sorghum	plastid	37.69	36.03
TraesCSU01G021400.1	Wheat	cytosol	34.1	34.82
Zm00001d017375_P001	Maize	plastid	36.41	34.3
TraesCS2D01G599900.1	Wheat	cytosol	33.59	34.29
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	33.08	33.95
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	40.77	32.92
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	18.72	32.44
Os04t0679600-01	Rice	nucleus	25.64	24.75
KRH40331	Soybean	cytosol, nucleus	25.9	23.76
KRH00904	Soybean	cytosol	25.64	23.53

Protein Annotations

EMBL:ACUP02007787	EnsemblPlants:KRH27215	EnsemblPlantsGene:GLYMA_12G222500	EntrezGene:100787229	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR13780	PANTHER:PTHR13780:SF55	PFAM:PF00571	PFscan:PS51371	ProteinID:KRH27215	ProteinID:KRH27215.1
SEG:seg	SUPFAM:SSF54631	UniParc:UPI000233CA31	UniProt:I1LUY9	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr12:+:38215802..38218587

Molecular Weight (calculated)

42054.6 Da

IEP (calculated)

5.640

GRAVY (calculated)

0.157

Length

390 amino acids

Sequence
(BLAST)

001: MAVSFLARDV SDLCLGKPPL RSLSAAATVA DALDALKSSD GEIHVSVWSF ENEVGRCVGK LCMVDVICYL CREDNLLSPS KSLKEPLSSI LPKDHNLVVH
101: LQPSSSLLEA IDLILQGAQN FVVPILPTKR SGVSRRKQQH QKASSTINSH SSCEFCWLTQ EDVIRFLLGS IGVFTPLPAL SIDSLGIVSS DVLAIDYYSP
201: ASSTVGAISK SLAQQTSVAI VDSDGTFIGE ISPFTLACCD ETVAAAMATL SAGDLMAYID CGGPPEDLVR VVKARLKEKN LEKMLQEFTI LSSCESSQLA
301: SSSSSSDEES TTRTPARSGR LARSSSYSAR MVRKAEAIVC HPKSSLVAVM IQAIAHRVNY LWVIEDDCSL VGIVTFSNML KVFREHLETM

Best Arabidopsis Sequence Match ( AT4G27460.1 )
(BLAST)

001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M

Arabidopsis Description

CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.