Factsheet for TraesCS6B01G264200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G282200.1
TraesCS2B01G299400.1
TraesCS2D01G281000.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7D01G134000.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G218300.1	Wheat	plastid	95.36	96.1
TraesCS6A01G235600.1	Wheat	plastid	95.62	94.88
HORVU6Hr1G060370.2	Barley	plastid	93.3	91.65
EES05487	Sorghum	plastid	67.53	64.22
Zm00001d017375_P001	Maize	plastid	67.01	62.8
TraesCS1B01G187200.1	Wheat	plastid	44.59	46.38
GSMUA_Achr2P18550_001	Banana	cytosol	43.3	43.08
GSMUA_Achr11P...	Banana	cytosol	40.46	40.57
KRH22128	Soybean	plastid	37.37	37.28
KRH27215	Soybean	cytosol	37.37	37.18
VIT_00s0587g00030.t01	Wine grape	cytosol	36.6	36.98
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	37.11	36.55
CDY53481	Canola	cytosol	37.89	36.39
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	35.31	35.4
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	35.31	35.4
CDY66674	Canola	cytosol	36.86	34.88
AT4G27460.1	Thale cress	plastid	35.05	34.78
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	34.54	34.72
KRH21471	Soybean	cytosol	35.31	34.42
KRH10848	Soybean	cytosol	33.76	34.38
PGSC0003DMT400057642	Potato	cytosol	35.57	34.24
CDX96240	Canola	cytosol	35.31	34.16
CDY28817	Canola	cytosol	33.76	34.11
Solyc02g078480.2.1	Tomato	cytosol	35.57	34.07
AT5G53750.1	Thale cress	cytosol	35.31	33.58
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	34.02	33.33
Solyc10g009010.2.1	Tomato	cytosol	33.76	33.33
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	34.02	33.33
PGSC0003DMT400058761	Potato	mitochondrion	33.76	33.33
PGSC0003DMT400033347	Potato	cytosol	34.02	33.08
Bra022672.1-P	Field mustard	cytosol	31.19	32.53
Solyc03g006470.2.1	Tomato	cytosol	31.96	31.0
Bra029056.1-P	Field mustard	cytosol	35.31	28.9
TraesCS3B01G463800.1	Wheat	cytosol	23.2	22.61
TraesCS7B01G156400.1	Wheat	plastid	23.45	22.58
TraesCS3B01G463400.1	Wheat	plastid	20.88	17.38

Protein Annotations

EnsemblPlants:TraesCS6B01G264200.1	EnsemblPlantsGene:TraesCS6B01G264200	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF56
PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	MapMan:35.1

Description

No Description!

Coordinates

chr6B:+:475730869..475732176

Molecular Weight (calculated)

40533.6 Da

IEP (calculated)

5.481

GRAVY (calculated)

0.370

Length

388 amino acids

Sequence
(BLAST)

001: MAASILSHVV SDLCIGKPAV RVLPPSTPIA AALATLRAGA DPFVFVDAAP PDAKKTAALS VVKVSVAEIL CYVCGNLGDP AAALGRPVSV LTAVVGDHGV
101: TRRVDPQTSL LDAIDALLAN NSHSLVVPLH ARARKKHQHA SAGYCVLTQQ DIVRHLFGSI SLFSPVAALS VSSLGLVRRD DVHAVHVDDD ALDAIPLLRR
201: SIGQGTAVAV VADDDALVGE ICPGVLGSCD DVESVSAAFA ALSAGDAMTY IDCYFSPPEF LLRSIRAELT DKGLHAMCDL MDAAYTTDVA ALSSSSTSSD
301: EECLPLAPAR RARKMSSGSF RWRSTEDVAA CHAESSLVAV MAQALAHRVG HVWVVDEVSG VLVGVVSCAD VLTVLRDHLR LECHADDL

Best Arabidopsis Sequence Match ( AT4G27460.1 )
(BLAST)

001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M

Arabidopsis Description

CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.