Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- cytosol 1
- nucleus 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g074190.2.1 | |
| Solyc11g068720.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27460.1 | Solyc06g074190.2.1 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | Solyc11g068720.1.1 | AT5G22310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064370 | Potato | cytosol, extracellular, plastid | 92.68 | 92.68 |
| KRH27215 | Soybean | cytosol | 62.37 | 63.33 |
| KRH22128 | Soybean | plastid | 61.11 | 62.21 |
| VIT_19s0014g03090.t01 | Wine grape | extracellular, plastid, vacuole | 60.35 | 60.66 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 48.74 | 49.49 |
| CDY29313 | Canola | cytosol, extracellular, plastid, vacuole | 47.22 | 48.45 |
| Bra026347.1-P | Field mustard | cytosol, extracellular, plastid, vacuole | 46.97 | 48.06 |
| CDX89247 | Canola | cytosol, extracellular, plastid, vacuole | 46.97 | 48.06 |
| Solyc02g078480.2.1 | Tomato | cytosol | 48.74 | 47.65 |
| AT4G27460.1 | Thale cress | plastid | 46.97 | 47.57 |
| Solyc10g009010.2.1 | Tomato | cytosol | 46.21 | 46.56 |
| CDY53481 | Canola | cytosol | 47.22 | 46.29 |
| CDX96240 | Canola | cytosol | 46.72 | 46.13 |
| CDY66674 | Canola | cytosol | 47.47 | 45.85 |
| CDY28817 | Canola | cytosol | 44.44 | 45.83 |
| Bra022672.1-P | Field mustard | cytosol | 42.93 | 45.7 |
| GSMUA_Achr1P17630_001 | Banana | cytosol | 44.95 | 45.64 |
| AT5G53750.1 | Thale cress | cytosol | 46.72 | 45.34 |
| GSMUA_Achr11P... | Banana | cytosol | 43.94 | 44.96 |
| Zm00001d032560_P001 | Maize | plastid | 42.17 | 44.53 |
| KXG38242 | Sorghum | plastid | 42.68 | 44.36 |
| Solyc03g006470.2.1 | Tomato | cytosol | 44.44 | 44.0 |
| TraesCS1D01G167600.1 | Wheat | plastid | 41.41 | 43.97 |
| GSMUA_Achr3P14310_001 | Banana | cytosol | 41.67 | 43.88 |
| GSMUA_Achr2P18550_001 | Banana | cytosol | 43.18 | 43.85 |
| TraesCS1A01G170000.1 | Wheat | plastid | 41.16 | 43.7 |
| TraesCS1B01G187200.1 | Wheat | plastid | 41.16 | 43.7 |
| Zm00001d013933_P001 | Maize | cytosol, plastid | 40.66 | 43.05 |
| Os10t0499400-01 | Rice | cytosol, endoplasmic reticulum | 30.3 | 42.55 |
| Bra029056.1-P | Field mustard | cytosol | 44.7 | 37.34 |
| TraesCS6D01G218300.1 | Wheat | plastid | 33.59 | 34.55 |
| HORVU6Hr1G060370.2 | Barley | plastid | 34.09 | 34.18 |
| TraesCS6B01G264200.1 | Wheat | plastid | 33.33 | 34.02 |
| TraesCS2A01G586700.1 | Wheat | cytosol, peroxisome, plastid | 32.58 | 33.95 |
| TraesCS2D01G599900.1 | Wheat | cytosol | 32.58 | 33.77 |
| TraesCS6A01G235600.1 | Wheat | plastid | 33.33 | 33.76 |
| EES05487 | Sorghum | plastid | 34.6 | 33.58 |
| HORVU1Hr1G044960.1 | Barley | mitochondrion, plastid | 40.66 | 33.33 |
| TraesCSU01G021400.1 | Wheat | cytosol | 31.57 | 32.72 |
| Zm00001d017375_P001 | Maize | plastid | 32.58 | 31.16 |
| HORVU2Hr1G118660.1 | Barley | cytosol, extracellular, mitochondrion, plastid | 16.67 | 29.33 |
| Solyc04g056630.2.1 | Tomato | cytosol | 24.75 | 23.33 |
| Os04t0679600-01 | Rice | nucleus | 21.72 | 21.29 |
Protein Annotations
| EnsemblPlants:Solyc10g006920.2.1 | EnsemblPlantsGene:Solyc10g006920.2 | InterPro:CBS_dom | InterPro:IPR000644 | PANTHER:PTHR13780 | PANTHER:PTHR13780:SF55 |
| PFAM:PF00571 | PFscan:PS51371 | SEG:seg | SUPFAM:SSF54631 | UniParc:UPI000276AFB8 | UniProt:K4CXM2 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:1351502..1353880
Molecular Weight (calculated)
43057.9 Da
IEP (calculated)
4.663
GRAVY (calculated)
0.221
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAHLLAHEV ADLCLGKPPL RSLCVSATIG EALISLKSCE ENCISVWDCD HFKNVDCICV GKICMVDIIC FLCRKENVNS PSLALKTPVT ALLPKDSVLV
101: RHVQPSTSLL EAIDLILQGA QNLVVPIETR FSGSSRRKLL QKSSSTRGCT LHDGREFCWL TQDDIIRYFM SSIGLFSPLP TASIDALGIV STEFLSIGYH
201: SSASLATEAI SRSLVDQTSV AIVDEDGVLI GEISPFTLAC CGETVAAAIT TLTAGELLAY IDCGGPPEDI VRVVKERLKE RNLEGMLEEF EIDPSDISSN
301: SSLSDEEFPS PTSSRSSGVR YNKSSSYSAR MVRRAEAIVC YPGSSLVAVM VQAIAHRVNY VWVIEEDCSV VGIVTFANML QVFRDQLESM MLGHFD
101: RHVQPSTSLL EAIDLILQGA QNLVVPIETR FSGSSRRKLL QKSSSTRGCT LHDGREFCWL TQDDIIRYFM SSIGLFSPLP TASIDALGIV STEFLSIGYH
201: SSASLATEAI SRSLVDQTSV AIVDEDGVLI GEISPFTLAC CGETVAAAIT TLTAGELLAY IDCGGPPEDI VRVVKERLKE RNLEGMLEEF EIDPSDISSN
301: SSLSDEEFPS PTSSRSSGVR YNKSSSYSAR MVRRAEAIVC YPGSSLVAVM VQAIAHRVNY VWVIEEDCSV VGIVTFANML QVFRDQLESM MLGHFD
001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
Arabidopsis Description
CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.