Factsheet for TraesCS1D01G167600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G282200.1
TraesCS2B01G299400.1
TraesCS2D01G281000.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7D01G134000.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G187200.1	Wheat	plastid	98.93	98.93
TraesCS1A01G170000.1	Wheat	plastid	98.93	98.93
Zm00001d032560_P001	Maize	plastid	79.36	78.93
KXG38242	Sorghum	plastid	79.89	78.22
Zm00001d013933_P001	Maize	cytosol, plastid	77.75	77.54
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	57.37	75.89
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	95.71	73.91
GSMUA_Achr2P18550_001	Banana	cytosol	58.45	55.9
GSMUA_Achr11P...	Banana	cytosol	55.5	53.49
TraesCS6D01G218300.1	Wheat	plastid	46.38	44.94
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	44.77	42.39
VIT_00s0587g00030.t01	Wine grape	cytosol	43.43	42.19
KRH27215	Soybean	cytosol	43.7	41.79
KRH22128	Soybean	plastid	43.43	41.65
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	43.97	41.41
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	43.97	41.41
PGSC0003DMT400057642	Potato	cytosol	41.82	38.71
PGSC0003DMT400058761	Potato	mitochondrion	40.75	38.68
Solyc02g078480.2.1	Tomato	cytosol	41.82	38.52
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	39.95	38.5
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	39.95	38.5
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	39.68	38.34
PGSC0003DMT400033347	Potato	cytosol	40.48	37.84
Solyc10g009010.2.1	Tomato	cytosol	39.41	37.4
CDY53481	Canola	cytosol	40.21	37.13
AT4G27460.1	Thale cress	plastid	38.87	37.08
CDY66674	Canola	cytosol	40.75	37.07
AT5G53750.1	Thale cress	cytosol	40.48	37.01
Solyc03g006470.2.1	Tomato	cytosol	39.41	36.75
TraesCS2D01G599900.1	Wheat	cytosol	37.27	36.39
CDY28817	Canola	cytosol	36.73	35.68
CDX96240	Canola	cytosol	38.07	35.41
KRH10848	Soybean	cytosol	35.92	35.17
KRH21471	Soybean	cytosol	37.27	34.92
Bra022672.1-P	Field mustard	cytosol	32.98	33.06
Bra029056.1-P	Field mustard	cytosol	37.53	29.54
TraesCS7D01G259800.1	Wheat	plastid	24.66	22.83
TraesCS3D01G422700.1	Wheat	cytosol	21.72	20.35

Protein Annotations

EnsemblPlants:TraesCS1D01G167600.1	EnsemblPlantsGene:TraesCS1D01G167600	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF39
PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	MapMan:35.1

Description

No Description!

Coordinates

chr1D:-:239556923..239558827

Molecular Weight (calculated)

38927.8 Da

IEP (calculated)

5.439

GRAVY (calculated)

0.265

Length

373 amino acids

Sequence
(BLAST)

001: MAVSLLANDV SDLCIGKPAV RSLPLSAAAG DLAATVRKGP RAAAAACIAV GPARGAVVGR AGLADVLCLL CSSPDALGRP AAALDRPVSA LLPKDGAGEV
101: RRVDPRSSVL EALDEILSGA QVLAVPLRSG GRKKQLGGVA GVTGDFCWLT QEDLVRYFLN SISLFYHVAA RSVSSLGLVR PDFLSARPDE AALSAVPLIR
201: RAIAAETAVA VVSTDGHLVG EISTAHLAAC DETAAAAIAT LSAADLMAYI DYFGSPPEHI LRAIKTGLKA KGLDAMLELM EDETMTSFSL SSSSSDDDTG
301: RPHLRRPSSG SFGRRSTEEP VVCSPASSLV AVMVQALAHR VSYLWVLDEE DDCRLAGIVT FADILRVFRE QLQ

Best Arabidopsis Sequence Match ( AT4G27460.1 )
(BLAST)

001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M

Arabidopsis Description

CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.