Factsheet for Zm00001d032560_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d025208_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT4G27460.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT4G27460.1	Zm00001d025208_P002	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38242	Sorghum	plastid	94.67	93.18
Zm00001d013933_P001	Maize	cytosol, plastid	88.27	88.5
TraesCS1B01G187200.1	Wheat	plastid	79.2	79.62
TraesCS1A01G170000.1	Wheat	plastid	79.2	79.62
TraesCS1D01G167600.1	Wheat	plastid	78.93	79.36
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	58.4	77.66
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	76.8	59.63
GSMUA_Achr2P18550_001	Banana	cytosol	56.8	54.62
GSMUA_Achr11P...	Banana	cytosol	54.4	52.71
VIT_00s0587g00030.t01	Wine grape	cytosol	44.27	43.23
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	45.33	42.93
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	45.07	42.89
KRH27215	Soybean	cytosol	44.27	42.56
KRH22128	Soybean	plastid	44.0	42.42
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	44.53	42.17
Zm00001d017375_P001	Maize	plastid	46.4	42.03
Solyc02g078480.2.1	Tomato	cytosol	42.4	39.26
PGSC0003DMT400033347	Potato	cytosol	41.6	39.1
PGSC0003DMT400057642	Potato	cytosol	41.87	38.96
PGSC0003DMT400058761	Potato	mitochondrion	40.53	38.68
AT4G27460.1	Thale cress	plastid	39.73	38.11
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	39.2	37.98
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	39.2	37.98
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	38.93	37.82
Solyc10g009010.2.1	Tomato	cytosol	39.2	37.4
CDY66674	Canola	cytosol	40.8	37.32
KRH21471	Soybean	cytosol	39.2	36.93
Solyc03g006470.2.1	Tomato	cytosol	39.2	36.75
CDY53481	Canola	cytosol	39.47	36.63
KRH10848	Soybean	cytosol	37.07	36.48
AT5G53750.1	Thale cress	cytosol	38.93	35.78
CDY28817	Canola	cytosol	36.53	35.68
CDX96240	Canola	cytosol	38.13	35.66
Bra022672.1-P	Field mustard	cytosol	33.33	33.6
Bra029056.1-P	Field mustard	cytosol	37.6	29.75
Zm00001d031600_P001	Maize	plastid	22.67	21.52
Zm00001d042343_P001	Maize	extracellular	21.87	20.15

Protein Annotations

EMBL:BT055867	EnsemblPlants:Zm00001d032560_P001	EnsemblPlants:Zm00001d032560_T001	EnsemblPlantsGene:Zm00001d032560	EntrezGene:100280253	Gene3D:3.10.580.10
InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF55	PFAM:PF00571	PFscan:PS51371
ProteinID:ONM05378.1	SEG:seg	SUPFAM:SSF54631	UniParc:UPI000191784E	UniProt:B8A2S5	MapMan:35.1

Description

CBS domain-containing protein CBSX5

Coordinates

chr1:-:230529377..230531598

Molecular Weight (calculated)

39034.9 Da

IEP (calculated)

5.475

GRAVY (calculated)

0.331

Length

375 amino acids

Sequence
(BLAST)

001: MAVSFLANEV SDLCIGKPAV RSLPLSAAAG DLAAALRRVA RSGAPSCVAV TGPARAVVGR VGLADVLCFL CTDPEALARP AVVFSKPVSA LLPKDGAGEV
101: RRVDPRSSIL EALDAVLSGA QVLAVPLRAG WRKKQLGGGG GSAAAGDFCW LTQEDLVRYF LNSIGLFYHV AARSVSSLGL VRTDFLSVRP GEAALSAVPL
201: IRRAVATETA VAVVTEDGHL LGEISPALLA ACDETAAAAI ATLSAADLMA YVDYFGSPPE HISRAIKAGL KDKGLDAMLA LVEDETLSSF SSASSSSDEE
301: AGRTQLRRPS SGSYGRRSAE EPVVCSPASS LVAVMVQALA HRVSYVWVLD EDSDCRLAGI VTFADVLRVF REQLL

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.