Factsheet for Solyc02g078480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057642	Potato	cytosol	94.32	94.79
Solyc10g009010.2.1	Tomato	cytosol	62.47	64.38
Solyc03g006470.2.1	Tomato	cytosol	61.73	62.5
VIT_00s0587g00030.t01	Wine grape	cytosol	58.02	61.2
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	47.65	48.74
KRH21471	Soybean	cytosol	47.16	47.99
GSMUA_AchrUn_...	Banana	cytosol, plastid	45.68	47.44
KRH10848	Soybean	cytosol	44.44	47.24
GSMUA_Achr3P14310_001	Banana	cytosol	42.22	45.48
GSMUA_Achr2P18550_001	Banana	cytosol	42.96	44.62
GSMUA_Achr11P...	Banana	cytosol	42.22	44.19
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	30.62	43.97
GSMUA_Achr1P17630_001	Banana	cytosol	41.98	43.59
Zm00001d032560_P001	Maize	plastid	39.26	42.4
TraesCS1A01G170000.1	Wheat	plastid	39.01	42.36
TraesCS1B01G187200.1	Wheat	plastid	39.01	42.36
KXG38242	Sorghum	plastid	39.75	42.26
TraesCS1D01G167600.1	Wheat	plastid	38.52	41.82
Zm00001d013933_P001	Maize	cytosol, plastid	37.78	40.91
TraesCS6D01G218300.1	Wheat	plastid	34.57	36.36
TraesCS6B01G264200.1	Wheat	plastid	34.07	35.57
HORVU6Hr1G060370.2	Barley	plastid	34.32	35.19
TraesCS6A01G235600.1	Wheat	plastid	33.83	35.04
Zm00001d017375_P001	Maize	plastid	35.8	35.02
EES05487	Sorghum	plastid	34.57	34.31
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	31.85	33.95
TraesCS2D01G599900.1	Wheat	cytosol	30.86	32.72
TraesCSU01G021400.1	Wheat	cytosol	30.86	32.72
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	37.78	31.68
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	17.53	31.56
Solyc04g056630.2.1	Tomato	cytosol	27.65	26.67
Os04t0679600-01	Rice	nucleus	23.7	23.76

Protein Annotations

EnsemblPlants:Solyc02g078480.2.1	EnsemblPlantsGene:Solyc02g078480.2	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF55
PFAM:PF00571	PFscan:PS51371	SEG:seg	SUPFAM:SSF54631	UniParc:UPI00027682B1	UniProt:K4B972
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:43143927..43146197

Molecular Weight (calculated)

44292.9 Da

IEP (calculated)

4.714

GRAVY (calculated)

-0.020

Length

405 amino acids

Sequence
(BLAST)

001: MAVSFLNREV SDLCLGKPAL KPIPAEATVS EALTLLKKSG ETHVSVWSCD HIRKVVEEEE GGGGYSVCRC IGKICMVDVI CFLCTEENLA DPSKALQTPV
101: EQILPKGNSI VRHLDPNSSL LEAIDYILEG AQNLVIPIQN SKSTPSRKKL SSKASFLTPT NHNGVEYCWL TQEDIVRFLL NSIGVFSPMP TFSIESLNII
201: NHDMMTVSYH DPAISSLDAI IRAYIEQSSV AVVDEDNRLI GEISPFTLAY CDETVAAAIA TLSAGDLMTY IDYGGPPEDL IELVKMRLQE KKLGAMVELI
301: DEEFSLSSSS SSASSCSSDD ESGSSKVTVL GRYSSARRSE AITCYPWSSL VAVMIQALAH RANSIWVMDE DHNLIGVVTF KGILEVFRSI ANAKRKPERE
401: NTSKQ

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.