Factsheet for GSMUA_Achr2P18550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT4G27460.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	71.54	72.09
TraesCS1B01G187200.1	Wheat	plastid	56.15	58.71
TraesCS1D01G167600.1	Wheat	plastid	55.9	58.45
TraesCS1A01G170000.1	Wheat	plastid	55.9	58.45
Zm00001d032560_P001	Maize	plastid	54.62	56.8
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	40.77	56.38
KXG38242	Sorghum	plastid	54.36	55.64
GSMUA_AchrUn_...	Banana	cytosol, plastid	55.13	55.13
Zm00001d013933_P001	Maize	cytosol, plastid	52.82	55.08
GSMUA_Achr3P14310_001	Banana	cytosol	52.56	54.52
GSMUA_Achr1P17630_001	Banana	cytosol	54.1	54.1
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	47.18	46.7
KRH27215	Soybean	cytosol	46.41	46.41
EES05487	Sorghum	plastid	47.44	45.34
VIT_00s0587g00030.t01	Wine grape	cytosol	44.62	45.31
KRH22128	Soybean	plastid	45.13	45.24
TraesCS6D01G218300.1	Wheat	plastid	43.59	44.16
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	54.1	43.69
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	43.08	43.52
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	43.08	43.41
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	43.08	43.41
TraesCS6B01G264200.1	Wheat	plastid	43.08	43.3
PGSC0003DMT400058761	Potato	mitochondrion	43.59	43.26
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	43.85	43.18
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	43.85	43.18
PGSC0003DMT400057642	Potato	cytosol	44.62	43.18
TraesCS6A01G235600.1	Wheat	plastid	43.08	42.97
Solyc02g078480.2.1	Tomato	cytosol	44.62	42.96
HORVU6Hr1G060370.2	Barley	plastid	43.33	42.78
Zm00001d017375_P001	Maize	plastid	45.38	42.75
Solyc10g009010.2.1	Tomato	cytosol	42.82	42.49
PGSC0003DMT400033347	Potato	cytosol	43.08	42.11
AT4G27460.1	Thale cress	plastid	40.77	40.66
AT5G53750.1	Thale cress	cytosol	42.31	40.44
CDY66674	Canola	cytosol	42.31	40.24
KRH21471	Soybean	cytosol	40.77	39.95
CDY53481	Canola	cytosol	41.28	39.85
Solyc03g006470.2.1	Tomato	cytosol	40.77	39.75
KRH10848	Soybean	cytosol	38.72	39.63
CDX96240	Canola	cytosol	40.51	39.4
CDY28817	Canola	cytosol	38.72	39.32
Bra022672.1-P	Field mustard	cytosol	35.13	36.83
Bra029056.1-P	Field mustard	cytosol	41.03	33.76
GSMUA_Achr10P...	Banana	cytosol	23.08	23.75
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	21.54	19.49
GSMUA_AchrUn_...	Banana	cytosol	22.05	19.46

Protein Annotations

EnsemblPlants:GSMUA_Achr2P18550_001	EnsemblPlants:GSMUA_Achr2T18550_001	EnsemblPlantsGene:GSMUA_Achr2G18550_001	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF55	PFAM:PF00571	PFscan:PS51371	SEG:seg	SUPFAM:SSF54631	UniParc:UPI000295F835
UniProt:M0S946	MapMan:35.1	:	:	:	:

Description

cystathionin beta synthase protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G18550_001]

Coordinates

chr2:+:18935839..18937195

Molecular Weight (calculated)

41328.8 Da

IEP (calculated)

5.255

GRAVY (calculated)

0.243

Length

390 amino acids

Sequence
(BLAST)

001: MAVSLVSNEV SDLCIGKPAL RSLPLSAAVV GDALFALRGS GEPHLAVVSA DRDAPDKKAV TGKLCVADVI CYLCSDGNLE SPTVALGRPV SVLLSKGAGL
101: VRRVERQFSV LEALDLILDG AQNLVVPIGS VGRKKLHHGG GGATVEYCWL THEDFVRYFL NSIAVFSPVA TLSIDAVGLV RSATALTVRH DEPGLALLPV
201: LRRALSEQAA VAVVTDDGRL LGEISPLALS ACDLMAVTLA AGVATLTAGD LMAFVDYYGS PPESLVRAIR AGLKEKGLQE MLELMEDVLS SFSHSSSSPS
301: ASSSSSSSDE ESSGGRLPRR LRSRSFSMGR RSEEPEVCHP GNSLVAVMVQ ALAHRVSYLW VVDEDDYSLI GIVTFADMLR VFREQLQPSL

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.