Factsheet for GSMUA_Achr7P22870_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	68.91	78.36
Os01t0920000-01	Rice	cytosol, plasma membrane	55.92	62.76
TraesCS3B01G463800.1	Wheat	cytosol	52.2	56.53
Zm00001d042343_P001	Maize	extracellular	53.36	56.51
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	55.68	56.21
Solyc04g056630.2.1	Tomato	cytosol	54.52	55.95
TraesCS3D01G422700.1	Wheat	cytosol	51.51	55.78
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	54.52	55.69
TraesCS3A01G427100.1	Wheat	cytosol	51.04	55.28
EES04112	Sorghum	cytosol	52.2	55.01
HORVU3Hr1G094090.2	Barley	cytosol	50.81	54.61
CDY68980	Canola	cytosol	53.83	54.46
KRH40331	Soybean	cytosol, nucleus	53.6	54.35
GSMUA_AchrUn_...	Banana	cytosol	55.68	54.3
CDY39289	Canola	cytosol	53.83	54.21
AT1G65320.1	Thale cress	cytosol	52.9	53.65
KRH00904	Soybean	cytosol	51.97	52.71
Bra004113.1-P	Field mustard	plastid	52.67	52.3
TraesCS3B01G463400.1	Wheat	plastid	46.17	42.7
GSMUA_Achr11P...	Banana	cytosol	21.58	24.03
GSMUA_AchrUn_...	Banana	cytosol, plastid	21.58	23.85
GSMUA_Achr3P14310_001	Banana	cytosol	20.42	23.4
GSMUA_Achr1P17630_001	Banana	cytosol	20.42	22.56
GSMUA_Achr2P18550_001	Banana	cytosol	19.49	21.54

Protein Annotations

EnsemblPlants:GSMUA_Achr7P22870_001	EnsemblPlants:GSMUA_Achr7T22870_001	EnsemblPlantsGene:GSMUA_Achr7G22870_001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR13780	PANTHER:PTHR13780:SF46	PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116
SUPFAM:SSF54631	UniParc:UPI000295D6D0	UniProt:M0TJX3	MapMan:35.1	:	:

Description

CBS domain-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G22870_001]

Coordinates

chr7:-:25242780..25246535

Molecular Weight (calculated)

46607.1 Da

IEP (calculated)

8.106

GRAVY (calculated)

0.087

Length

431 amino acids

Sequence
(BLAST)

001: MALVFLHHVV GDLTLGKPEL VEFSEAETPA AAAARPPAER FVGMLNSSDV VAFLALSGAD PEKAMRTPVA EVVTPNPGLL KEVDPGTRHC KYEFSFQFAV
101: VSTCLVILSY SLNHTHSFGS NSLKNTSLCA LLHSKTISYR LLIDALEMMK QGVRCLLVRK SIMWKGFSKR FSILYNGKWL KNIQSSSLGG VSNSDQPSSS
201: ALPDNKFCCL SREDVVRFII GCLGALAPLP LSSIASLGAI STTYSFIEAP SPAFEAIYKI PHDPCAIAVI ETNSDGTHKI IGDISAYKLW KCDYLAAAWA
301: MANLSAGQFV IGADDYGTTR ASVPDFPINS PTDGSGPGVS SRPRKFSSRS IGFFNNQVNQ MPVGRLRSMY RGRSAPLTCK HTSSLAAVMA QMLSHRATHV
401: WVTDADMEDD ILVGIVSYTD ILNAVTKFPP P

Best Arabidopsis Sequence Match ( AT1G65320.1 )
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS

Arabidopsis Description

CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.