Factsheet for VIT_04s0023g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40331	Soybean	cytosol, nucleus	72.6	72.94
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	67.92	68.72
Solyc04g056630.2.1	Tomato	cytosol	66.74	67.86
KRH00904	Soybean	cytosol	66.74	67.06
AT1G65320.1	Thale cress	cytosol	65.81	66.12
CDY39289	Canola	cytosol	64.64	64.49
CDY68980	Canola	cytosol	63.93	64.08
Bra004113.1-P	Field mustard	plastid	64.4	63.36
GSMUA_Achr10P...	Banana	cytosol	56.21	63.32
Os01t0920000-01	Rice	cytosol, plasma membrane	51.05	56.77
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	56.21	55.68
Zm00001d042343_P001	Maize	extracellular	51.52	54.05
EES04112	Sorghum	cytosol	51.29	53.55
TraesCS3D01G422700.1	Wheat	cytosol	49.88	53.52
TraesCS3B01G463800.1	Wheat	cytosol	49.65	53.27
HORVU3Hr1G094090.2	Barley	cytosol	49.88	53.12
TraesCS3A01G427100.1	Wheat	cytosol	49.41	53.02
GSMUA_AchrUn_...	Banana	cytosol	48.48	46.83
TraesCS3B01G463400.1	Wheat	plastid	45.9	42.06
VIT_00s0587g00030.t01	Wine grape	cytosol	23.18	25.78
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	22.01	23.86

Protein Annotations

EntrezGene:100266840	wikigene:100266840	Gene3D:3.10.580.10	MapMan:35.1	ProteinID:CBI17654	ProteinID:CBI17654.3
InterPro:CBS_dom	ncoils:Coil	UniProt:D7SPS5	EMBL:FN594959	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	InterPro:IPR000644	EntrezGene:LOC100266840	wikigene:LOC100266840
PFAM:PF00571	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF46	SUPFAM:SSF54631	TIGR:TC65355
UniParc:UPI00015CA588	ArrayExpress:VIT_04s0023g00310	EnsemblPlantsGene:VIT_04s0023g00310	EnsemblPlants:VIT_04s0023g00310.t01	unigene:Vvi.15044	RefSeq:XP_002279210
RefSeq:XP_002279210.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:16461788..16467553

Molecular Weight (calculated)

46048.3 Da

IEP (calculated)

8.462

GRAVY (calculated)

-0.001

Length

427 amino acids

Sequence
(BLAST)

001: MASVFLYHVV GDLTVGKPEL VEFPETETVE SAIRVIGESA EGSIPIWKRR SHVGVMEKSE MRQQRFVGIL NSLDIVAFLA RDACLVDQEK AMKTPVSEVV
101: VPNNSLLREV DPATRLIDAL EMMKHGLKRL LVPKSVVWKG MSKRFSILYN GKWLKNLDAS SSSTNLAPNA NRPSSSSTPS SRNKFCCLSR EDVIRFVIGC
201: LGALAPLPLS SISSLGAISP NYYSIEASFP AIQVTQKLPQ DPSAVAVVES TPDGQYKIIG EISACKLWKC DYLAAAWALA NLSAGQFVMG VEDNVTSRSL
301: PHFSVNLTGG ENNMANGGAS TRQRKFSSRS IGFFSNPASP SFGASRSMYR GRSAPLTCKV TSSLAAVMAQ MLSHRATHVW VTEAESEDIL VGVVGYADIL
401: AAVIKQPAPV IPSTTPSGEG YATEIQN

Best Arabidopsis Sequence Match ( AT1G65320.1 )
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS

Arabidopsis Description

CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.