Factsheet for Bra004113.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68980	Canola	cytosol	82.72	84.27
CDY39289	Canola	cytosol	81.8	82.94
AT1G65320.1	Thale cress	cytosol	77.19	78.82
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	63.36	64.4
KRH40331	Soybean	cytosol, nucleus	62.9	64.24
Solyc04g056630.2.1	Tomato	cytosol	61.52	63.57
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	61.29	63.03
KRH00904	Soybean	cytosol	60.6	61.88
GSMUA_Achr10P...	Banana	cytosol	51.15	58.58
Os01t0920000-01	Rice	cytosol, plasma membrane	49.08	55.47
Zm00001d042343_P001	Maize	extracellular	50.0	53.32
EES04112	Sorghum	cytosol	50.0	53.06
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	52.3	52.67
TraesCS3B01G463800.1	Wheat	cytosol	47.7	52.01
TraesCS3D01G422700.1	Wheat	cytosol	47.7	52.01
TraesCS3A01G427100.1	Wheat	cytosol	47.23	51.51
HORVU3Hr1G094090.2	Barley	cytosol	47.23	51.12
GSMUA_AchrUn_...	Banana	cytosol	45.16	44.34
TraesCS3B01G463400.1	Wheat	plastid	43.78	40.77
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	22.35	25.06
Bra022672.1-P	Field mustard	cytosol	18.2	21.24
Bra029056.1-P	Field mustard	cytosol	22.12	20.25

Protein Annotations

EnsemblPlants:Bra004113.1	EnsemblPlants:Bra004113.1-P	EnsemblPlantsGene:Bra004113	Gene3D:3.10.580.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF46	PFAM:PF00571	PFscan:PS51371	SEG:seg	SUPFAM:SSF54631	UniParc:UPI0002541407
UniProt:M4CIS9	MapMan:35.1	:	:	:	:

Description

AT1G65320 (E=7e-199) | CBS domain-containing protein

Coordinates

chrA07:-:16906379..16909385

Molecular Weight (calculated)

47018.2 Da

IEP (calculated)

8.042

GRAVY (calculated)

-0.111

Length

434 amino acids

Sequence
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR SSAALPPGLV ENSEMRQQRF VGILSSLDIV AFLAKSECLQ EDKAMKIPVS
101: QVISPNNTLL KQVDPGTRLI DALEMMKQGV RRLLVPKSVV WRGMSKRFSI LYNGKWLKNS ENSSSSSGLS ADSNRPATSK ASSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISSLGII NVNYNFIEAS LPAIEATKRP PCDPSAIAVL EQTEHDEKQF KIIGEISASK LWKCDYLAAA WALANLYAGQ FVMGVEDNMS
301: SRSFSDFLQT SFVGGGGGGE QNGTAATKAK KFSSRSIGFN PTSPTRLSIG RSMYRGRSAP LTCKTTSSLA AVMAQMLSHR ATHVWVTEAD SDDDDILVGV
401: VGYGEILAAV TKQPSAFVPS NRSYEGGFGN EHQS

Best Arabidopsis Sequence Match ( AT1G65320.1 )
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS

Arabidopsis Description

CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.