Factsheet for Bra029056.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
extracellular 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66674	Canola	cytosol	72.15	83.41
Bra022672.1-P	Field mustard	cytosol	61.39	78.23
AT5G53750.1	Thale cress	cytosol	63.29	73.53
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	49.79	60.98
KRH22128	Soybean	plastid	41.35	50.39
KRH27215	Soybean	cytosol	41.35	50.26
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	40.08	48.22
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	38.4	45.96
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	37.34	44.7
GSMUA_AchrUn_...	Banana	cytosol, plastid	35.44	43.08
GSMUA_Achr1P17630_001	Banana	cytosol	33.97	41.28
GSMUA_Achr3P14310_001	Banana	cytosol	32.7	41.22
GSMUA_Achr2P18550_001	Banana	cytosol	33.76	41.03
GSMUA_Achr11P...	Banana	cytosol	33.12	40.57
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	23.21	39.01
Zm00001d013933_P001	Maize	cytosol, plastid	30.17	38.24
TraesCS1B01G187200.1	Wheat	plastid	29.96	38.07
TraesCS1A01G170000.1	Wheat	plastid	29.75	37.8
Zm00001d032560_P001	Maize	plastid	29.75	37.6
TraesCS1D01G167600.1	Wheat	plastid	29.54	37.53
KXG38242	Sorghum	plastid	30.17	37.53
TraesCS6D01G218300.1	Wheat	plastid	29.32	36.1
TraesCS6B01G264200.1	Wheat	plastid	28.9	35.31
HORVU6Hr1G060370.2	Barley	plastid	29.32	35.19
TraesCS6A01G235600.1	Wheat	plastid	28.48	34.53
EES05487	Sorghum	plastid	29.32	34.07
Zm00001d017375_P001	Maize	plastid	29.54	33.82
TraesCS2D01G599900.1	Wheat	cytosol	26.58	32.98
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	26.37	32.89
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	15.61	32.89
TraesCSU01G021400.1	Wheat	cytosol	25.74	31.94
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	29.54	28.99
Os04t0679600-01	Rice	nucleus	18.99	22.28
Bra004113.1-P	Field mustard	plastid	20.25	22.12

Protein Annotations

EnsemblPlants:Bra029056.1	EnsemblPlants:Bra029056.1-P	EnsemblPlantsGene:Bra029056	Gene3D:3.10.580.10	PANTHER:PTHR13780	PANTHER:PTHR13780:SF55
SEG:seg	UniParc:UPI000253FF70	UniProt:M4EJU0	MapMan:35.1	:	:

Description

AT5G53750 (E=1e-126) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT4G27460.1); Has 79 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA03:-:6097975..6101603

Molecular Weight (calculated)

50598.2 Da

IEP (calculated)

5.035

GRAVY (calculated)

0.036

Length

474 amino acids

Sequence
(BLAST)

001: MALTLLSHEV SDLCIGKPPL RCLSAVTATV ADAIAALKSS DEPFLSVWSC NHDETNDDNN KCECECECVG KICMADVICY LTKHDNKALS LSSVLEASVS
101: VLLPKSRSIV VHVQSSCKLI EAIGLITGGA QDLIVPIQTK PITKRKQTRN AVVSLTTTTT TTTHKNSRQF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHAIL SVDYYSSASS AVTAISRAIS DNISVAVVDG ECDGEEDPRA VLIGEISPMT LACCDESAAA AVATLSAGDL MTYIDGSGPP ESLVRVVRNR
301: LEEKGLVGLI SLVDSLSGSS GSSSSDEESP AGRTKSYGRS VSSAARMARK SVAIVCNRRS SLMAVMIQAI AHRVSYVWVV DEDGCLVGWL FTHQRRYTIT
401: HNTPVPYDSW FSGAEPPEDW SSTPPPPPPP LNASPPNNIA PASNGAVKMD FSPLPDAAKN GYFLLTSLVR SMDQ

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.