Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000402_P001 | |
| Zm00001d003996_P001 | |
| Zm00001d025208_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27460.1 | Zm00001d000402_P001 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | Zm00001d003996_P001 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | Zm00001d025208_P002 | AT5G22310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05487 | Sorghum | plastid | 80.43 | 81.62 |
| TraesCS6D01G218300.1 | Wheat | plastid | 64.01 | 68.83 |
| TraesCS6A01G235600.1 | Wheat | plastid | 63.53 | 67.26 |
| TraesCS6B01G264200.1 | Wheat | plastid | 62.8 | 67.01 |
| HORVU6Hr1G060370.2 | Barley | plastid | 63.53 | 66.58 |
| Zm00001d032560_P001 | Maize | plastid | 42.03 | 46.4 |
| Zm00001d013933_P001 | Maize | cytosol, plastid | 41.06 | 45.45 |
| GSMUA_Achr2P18550_001 | Banana | cytosol | 42.75 | 45.38 |
| GSMUA_Achr11P... | Banana | cytosol | 40.34 | 43.15 |
| VIT_00s0587g00030.t01 | Wine grape | cytosol | 34.78 | 37.5 |
| VIT_19s0014g03090.t01 | Wine grape | extracellular, plastid, vacuole | 35.51 | 37.31 |
| KRH27215 | Soybean | cytosol | 34.3 | 36.41 |
| CDY29313 | Canola | cytosol, extracellular, plastid, vacuole | 33.57 | 36.01 |
| CDY53481 | Canola | cytosol | 35.02 | 35.89 |
| CDY66674 | Canola | cytosol | 35.51 | 35.85 |
| Solyc02g078480.2.1 | Tomato | cytosol | 35.02 | 35.8 |
| KRH22128 | Soybean | plastid | 33.57 | 35.73 |
| CDX89247 | Canola | cytosol, extracellular, plastid, vacuole | 33.33 | 35.66 |
| Bra026347.1-P | Field mustard | cytosol, extracellular, plastid, vacuole | 33.33 | 35.66 |
| PGSC0003DMT400057642 | Potato | cytosol | 34.54 | 35.48 |
| KRH10848 | Soybean | cytosol | 31.88 | 34.65 |
| AT5G53750.1 | Thale cress | cytosol | 34.06 | 34.56 |
| KRH21471 | Soybean | cytosol | 32.85 | 34.17 |
| AT4G27460.1 | Thale cress | plastid | 32.13 | 34.02 |
| CDY28817 | Canola | cytosol | 31.4 | 33.85 |
| PGSC0003DMT400058761 | Potato | mitochondrion | 32.13 | 33.84 |
| CDX96240 | Canola | cytosol | 32.61 | 33.67 |
| Solyc10g009010.2.1 | Tomato | cytosol | 31.64 | 33.33 |
| PGSC0003DMT400033347 | Potato | cytosol | 31.88 | 33.08 |
| PGSC0003DMT400064370 | Potato | cytosol, extracellular, plastid | 31.4 | 32.83 |
| Solyc10g006920.2.1 | Tomato | cytosol, peroxisome, plastid | 31.16 | 32.58 |
| Bra022672.1-P | Field mustard | cytosol | 28.99 | 32.26 |
| Solyc03g006470.2.1 | Tomato | cytosol | 31.16 | 32.25 |
| Bra029056.1-P | Field mustard | cytosol | 33.82 | 29.54 |
| Zm00001d031600_P001 | Maize | plastid | 21.26 | 22.28 |
| Zm00001d042343_P001 | Maize | extracellular | 21.5 | 21.87 |
Protein Annotations
| EnsemblPlants:Zm00001d017375_P001 | EnsemblPlants:Zm00001d017375_T001 | EnsemblPlantsGene:Zm00001d017375 | EntrezGene:103627468 | InterPro:CBS_dom | InterPro:IPR000644 |
| PANTHER:PTHR13780 | PANTHER:PTHR13780:SF56 | PFAM:PF00571 | PFscan:PS51371 | ProteinID:AQK73033.1 | SEG:seg |
| SUPFAM:SSF54631 | UniParc:UPI0002213EA9 | UniProt:A0A1D6HEG1 | MapMan:35.1 | : | : |
Description
CBS domain-containing protein CBSX5
Coordinates
chr5:+:193827106..193828931
Molecular Weight (calculated)
42990.3 Da
IEP (calculated)
6.137
GRAVY (calculated)
0.284
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATLLSHVV SDLCIGRPRV LTLPPSTPVA AALAALRTGA DPFVFVDDEP AACCHAKTTT YVKVTVADIL CYACGDAGNL RDVAAALSRP VAVVVAGAVA
101: SGHGVTHRVD PQTRLLDAID VLLTDGCQGL LVPLSARTRK RHHQHQGQAP SSDAGALLAT SSDCCVLTRE DIVRHLFGSI SHFSPVAALT VASLGLVRRD
201: VVHAVHVDDD GLDVIPLLRR AVSDGTAVAV VADDDALVGE ICPSVLASCD VEAVSAAFAG LSAGDTMAYI DCSLSSHSPP EFLVRAIRAQ LAGKGLDAMA
301: ELVECAGKDT AVLPLSPSSS LSSTSSDEDS PSGRARRPRR MSSGSFGWRS TEDVVACHSE SSLVAVMAQA LAHRVGYVWV ANETSGALVG VVRFADVLAV
401: LREQLRPQSV SPRC
101: SGHGVTHRVD PQTRLLDAID VLLTDGCQGL LVPLSARTRK RHHQHQGQAP SSDAGALLAT SSDCCVLTRE DIVRHLFGSI SHFSPVAALT VASLGLVRRD
201: VVHAVHVDDD GLDVIPLLRR AVSDGTAVAV VADDDALVGE ICPSVLASCD VEAVSAAFAG LSAGDTMAYI DCSLSSHSPP EFLVRAIRAQ LAGKGLDAMA
301: ELVECAGKDT AVLPLSPSSS LSSTSSDEDS PSGRARRPRR MSSGSFGWRS TEDVVACHSE SSLVAVMAQA LAHRVGYVWV ANETSGALVG VVRFADVLAV
401: LREQLRPQSV SPRC
001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN
Arabidopsis Description
CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.