Factsheet for HORVU6Hr1G060370.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
plastid 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G069400.8

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	HORVU2Hr1G069400.8	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G264200.1	Wheat	plastid	91.65	93.3
TraesCS6D01G218300.1	Wheat	plastid	89.87	92.21
TraesCS6A01G235600.1	Wheat	plastid	90.89	91.82
EES05487	Sorghum	plastid	66.84	64.71
Zm00001d017375_P001	Maize	plastid	66.58	63.53
GSMUA_Achr2P18550_001	Banana	cytosol	42.78	43.33
GSMUA_Achr11P...	Banana	cytosol	40.0	40.83
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	23.04	40.44
KRH22128	Soybean	plastid	37.22	37.79
KRH27215	Soybean	cytosol	37.22	37.69
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	37.47	37.56
VIT_00s0587g00030.t01	Wine grape	cytosol	35.95	36.98
CDY53481	Canola	cytosol	36.96	36.14
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	35.19	36.01
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	35.19	35.92
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	35.19	35.92
AT4G27460.1	Thale cress	plastid	35.44	35.81
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	43.04	35.2
CDY66674	Canola	cytosol	36.46	35.12
PGSC0003DMT400057642	Potato	cytosol	35.19	34.49
KRH21471	Soybean	cytosol	34.68	34.42
CDX96240	Canola	cytosol	34.94	34.41
KRH10848	Soybean	cytosol	33.16	34.38
CDY28817	Canola	cytosol	33.42	34.38
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	34.43	34.34
Solyc02g078480.2.1	Tomato	cytosol	35.19	34.32
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	34.18	34.09
PGSC0003DMT400058761	Potato	mitochondrion	33.67	33.84
PGSC0003DMT400033347	Potato	cytosol	34.18	33.83
AT5G53750.1	Thale cress	cytosol	34.94	33.82
Bra022672.1-P	Field mustard	cytosol	31.14	33.06
Solyc10g009010.2.1	Tomato	cytosol	32.66	32.82
Solyc03g006470.2.1	Tomato	cytosol	32.66	32.25
Bra029056.1-P	Field mustard	cytosol	35.19	29.32
HORVU3Hr1G094090.2	Barley	cytosol	21.52	21.2
HORVU7Hr1G053840.1	Barley	golgi	19.24	21.17

Protein Annotations

EnsemblPlants:HORVU6Hr1G060370.2	EnsemblPlantsGene:HORVU6Hr1G060370	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF56
PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI000294BC9D
UniProt:M0ZCG3	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:400671682..400673479

Molecular Weight (calculated)

41369.6 Da

IEP (calculated)

5.485

GRAVY (calculated)

0.380

Length

395 amino acids

Sequence
(BLAST)

001: MAASILSHVV SDLCIGKPAV RVLPSSTPIA AALATLRAGA DPFIFVDAAP PDVKKTAALS VVVKVSVAEI LCYVCGDTVN LGDPAAALRR PVSVLTAVVG
101: DHGVTRRVDP QTSLLDAIDV LLANNSHSLV VPLHARTRKK HHHVSSISAG YCVLTQQDIV RHLFGSISLF SPVAALSVSS LGIVRRDDVH AVHVDDDALD
201: AIPLLRRSIG QGTAVAVVAD DDALIGEICP GVLGSCDDVE SVSAAFAALS AGDAMTYIDC YFSPPEFLLR SIRAELTDKG LHAMCDLMDA AYATDAAALS
301: SSSTSSDEEC LPLAPARRAR KMSSGSFRWR STEDVAACHA ESSLVAVMAQ ALAHRVGHVW VVDEVSGALV GVVSCADVLA VLRDHLRPEC YADDL

Best Arabidopsis Sequence Match ( AT4G27460.1 )
(BLAST)

001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M

Arabidopsis Description

CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.