Factsheet for Bra026347.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, vacuole, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 2
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002404.1-P
Bra006620.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	Bra002404.1-P	AT5G22310.1	21798944
AT4G27460.1	Bra006620.1-P	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	100.0	100.0
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	95.09	95.34
AT4G27460.1	Thale cress	plastid	74.68	73.91
Bra022672.1-P	Field mustard	cytosol	55.3	57.53
KRH22128	Soybean	plastid	51.68	51.41
KRH27215	Soybean	cytosol	51.16	50.77
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	51.16	50.25
Bra029056.1-P	Field mustard	cytosol	60.98	49.79
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	49.1	47.98
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	48.06	46.97
GSMUA_AchrUn_...	Banana	cytosol, plastid	44.96	44.62
GSMUA_Achr1P17630_001	Banana	cytosol	43.67	43.33
GSMUA_Achr3P14310_001	Banana	cytosol	41.86	43.09
GSMUA_Achr2P18550_001	Banana	cytosol	43.41	43.08
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	30.23	41.49
GSMUA_Achr11P...	Banana	cytosol	40.57	40.57
TraesCS1A01G170000.1	Wheat	plastid	38.76	40.21
TraesCS1D01G167600.1	Wheat	plastid	38.5	39.95
TraesCS1B01G187200.1	Wheat	plastid	38.5	39.95
Zm00001d013933_P001	Maize	cytosol, plastid	38.5	39.84
Zm00001d032560_P001	Maize	plastid	37.98	39.2
KXG38242	Sorghum	plastid	38.5	39.11
TraesCS6D01G218300.1	Wheat	plastid	35.92	36.1
TraesCS6B01G264200.1	Wheat	plastid	35.4	35.31
HORVU6Hr1G060370.2	Barley	plastid	35.92	35.19
TraesCS6A01G235600.1	Wheat	plastid	35.4	35.04
EES05487	Sorghum	plastid	35.4	33.58
Zm00001d017375_P001	Maize	plastid	35.66	33.33
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	32.56	33.16
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	19.12	32.89
TraesCSU01G021400.1	Wheat	cytosol	31.78	32.2
TraesCS2D01G599900.1	Wheat	cytosol	31.52	31.94
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	37.47	30.02
Bra004113.1-P	Field mustard	plastid	25.06	22.35
Os04t0679600-01	Rice	nucleus	21.45	20.54

Protein Annotations

EnsemblPlants:Bra026347.1	EnsemblPlants:Bra026347.1-P	EnsemblPlantsGene:Bra026347	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF55	PFAM:PF00571	PFscan:PS51371	SEG:seg	SUPFAM:SSF54631	UniParc:UPI0002545B14
UniProt:M4EC38	MapMan:35.1	:	:	:	:

Description

AT4G27460 (E=2e-143) | CBS domain-containing protein

Coordinates

chrA01:+:9892498..9893825

Molecular Weight (calculated)

41578.8 Da

IEP (calculated)

4.838

GRAVY (calculated)

0.168

Length

387 amino acids

Sequence
(BLAST)

001: MALSLLSYDV TDLCLGKPPL RCLSASSSSV SDAIAALKSS DDPFLSVWNC NHDHDDVAEC ECLGKISMAD VICHLSKDEV HTLSALNSPV SVLLPPTRSL
101: VLHVQPSCSL VEAIDLIIQG AHNLIVPIQT KTATKKRQQN DNVSHTTTTT HSNGQRFCWI TQEDIVRFLL GCIAAFSPLP SMSISDLGII NSSHAILAVD
201: YNSSASAVVS AISRALADQT SVAVVDNEGD DSLMYLIGEI SPMTLTCCDE TAAAAVATLS AGYLMEYLDG VNPPESLVQE VRERLESKGQ IGLLSLLDTL
301: SLSSSPTSGY SSDEESPARS LGRSMSISTR MARKAEAVVC NPKSSLMAVM IQAITHRTNY TWVIDKDGCF VGMVTFVDIL KVFRKFL

Best Arabidopsis Sequence Match ( AT4G27460.1 )
(BLAST)

001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M

Arabidopsis Description

CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.