Factsheet for TraesCSU01G021400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G282200.1
TraesCS2B01G299400.1
TraesCS2D01G281000.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7D01G134000.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	84.29	84.74
TraesCS2D01G599900.1	Wheat	cytosol	80.37	80.37
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	34.82	59.11
GSMUA_AchrUn_...	Banana	cytosol, plastid	42.41	41.54
GSMUA_Achr3P14310_001	Banana	cytosol	40.84	41.49
GSMUA_Achr1P17630_001	Banana	cytosol	40.84	40.0
KRH27215	Soybean	cytosol	34.82	34.1
VIT_00s0587g00030.t01	Wine grape	cytosol	34.03	33.85
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	34.55	33.5
KRH22128	Soybean	plastid	33.77	33.16
CDX96240	Canola	cytosol	34.03	32.42
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	33.51	32.32
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	32.46	32.12
CDY66674	Canola	cytosol	34.29	31.95
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	32.2	31.78
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	32.2	31.78
CDY28817	Canola	cytosol	31.94	31.77
AT4G27460.1	Thale cress	plastid	32.46	31.71
CDY53481	Canola	cytosol	33.51	31.68
KRH21471	Soybean	cytosol	32.98	31.66
PGSC0003DMT400033347	Potato	cytosol	32.98	31.58
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	32.72	31.57
PGSC0003DMT400058761	Potato	mitochondrion	32.2	31.3
KRH10848	Soybean	cytosol	31.15	31.23
Solyc10g009010.2.1	Tomato	cytosol	31.94	31.04
AT5G53750.1	Thale cress	cytosol	32.98	30.88
Solyc02g078480.2.1	Tomato	cytosol	32.72	30.86
PGSC0003DMT400057642	Potato	cytosol	32.46	30.77
Bra022672.1-P	Field mustard	cytosol	29.84	30.65
Solyc03g006470.2.1	Tomato	cytosol	31.15	29.75
Os04t0679600-01	Rice	nucleus	30.1	28.47
Bra029056.1-P	Field mustard	cytosol	31.94	25.74
TraesCSU01G217700.1	Wheat	plastid	24.61	23.33
TraesCSU01G218600.1	Wheat	plastid	24.61	23.33

Protein Annotations

EnsemblPlants:TraesCSU01G021400.1	EnsemblPlantsGene:TraesCSU01G021400	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF39	PFscan:PS51371	SEG:seg	SUPFAM:SSF54631	MapMan:35.1	:

Description

No Description!

Coordinates

chrUn:+:23424911..23426159

Molecular Weight (calculated)

39748.4 Da

IEP (calculated)

5.881

GRAVY (calculated)

0.152

Length

382 amino acids

Sequence
(BLAST)

001: MVAGFLLESE VSDLCIGKPP IRWLPPSSTV AGAVAELEAD GGPGAAVAVW DGREGADVAG RVRMADVLLF LCVHDGSSEA TLADLLAAAG APPVRRVEPD
101: ASVLEAVDAL LGGAQNLVVP IRDNRHRPAH LQAEPMCWVT AEDVVRFFLG SVAFFSQIAL RSVSDLGAVR PARSVLAVAP GDDTLSATEP LLRAALATHA
201: SVAVVSGRCL VGEISPLTLC SSLAALSPMS FVDSARAPRE AALGPRLRSR NRHGVLDLLN AGGRDLPSPS SSSSSSSSSA SSSSSSSDGE DEDEKRVTPA
301: FTSTGRQAKF PARWTKGVIA CRRGSSLVAV MAQAVAHRVT QVWVLDDEPE GEVLVGAVGL VDVLRVLRRH LLRAPSAHSM AE

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.