Factsheet for Solyc03g006470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033347	Potato	cytosol	85.0	85.21
Solyc02g078480.2.1	Tomato	cytosol	62.5	61.73
Solyc10g009010.2.1	Tomato	cytosol	58.25	59.29
VIT_00s0587g00030.t01	Wine grape	cytosol	54.75	57.03
KRH21471	Soybean	cytosol	46.75	46.98
KRH10848	Soybean	cytosol	43.75	45.93
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	44.0	44.44
GSMUA_AchrUn_...	Banana	cytosol, plastid	42.0	43.08
GSMUA_Achr1P17630_001	Banana	cytosol	40.25	41.28
GSMUA_Achr11P...	Banana	cytosol	39.75	41.09
GSMUA_Achr2P18550_001	Banana	cytosol	39.75	40.77
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	28.0	39.72
TraesCS1D01G167600.1	Wheat	plastid	36.75	39.41
TraesCS1A01G170000.1	Wheat	plastid	36.75	39.41
Zm00001d032560_P001	Maize	plastid	36.75	39.2
TraesCS1B01G187200.1	Wheat	plastid	36.5	39.14
KXG38242	Sorghum	plastid	37.0	38.85
GSMUA_Achr3P14310_001	Banana	cytosol	36.5	38.83
Zm00001d013933_P001	Maize	cytosol, plastid	35.25	37.7
TraesCS6D01G218300.1	Wheat	plastid	31.5	32.73
HORVU6Hr1G060370.2	Barley	plastid	32.25	32.66
EES05487	Sorghum	plastid	32.75	32.11
TraesCS6A01G235600.1	Wheat	plastid	31.25	31.97
TraesCS6B01G264200.1	Wheat	plastid	31.0	31.96
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	29.75	31.32
Zm00001d017375_P001	Maize	plastid	32.25	31.16
TraesCSU01G021400.1	Wheat	cytosol	29.75	31.15
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	17.5	31.11
TraesCS2D01G599900.1	Wheat	cytosol	29.5	30.89
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	36.75	30.43
Solyc04g056630.2.1	Tomato	cytosol	28.25	26.9
Os04t0679600-01	Rice	nucleus	22.75	22.52

Protein Annotations

EnsemblPlants:Solyc03g006470.2.1	EnsemblPlantsGene:Solyc03g006470.2	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF55
PFAM:PF00571	PFscan:PS51371	SEG:seg	SUPFAM:SSF54631	UniParc:UPI00027679B6	UniProt:K4BE70
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:1055923..1057636

Molecular Weight (calculated)

43510.7 Da

IEP (calculated)

4.804

GRAVY (calculated)

-0.062

Length

400 amino acids

Sequence
(BLAST)

001: MAVRFLNRDV SDLCLGKPAL RSIPENATVA EALLLLKRSG ETHLSLWNCD HSSSVLEKAK ADYDGCHCVG KISMVDLICF LSKQEHLIDF SKAFEVPISK
101: ILPKGDSIVR HLDPNSSLLE AIDYMIEGTQ NAVIPIYNNG STDSRRKSSS PRSTNHNGVE YCWLTQEDVA RFLLNSIGVF SPMPTFSIES LNIIDHNIMT
201: IGYHDPAISA LDSITLANIE QTALAVVDND NKLIGEISAS TLAYCDEDVA AAITTLSAGD LMAYIDYGGP PEDLVGLVKM RLQEKKLDRM TKLIMEEEFS
301: ASSSSSSACS CSSDDESGSS RNGSGRFSSS RRSEAITCYP GSSLVAVLIQ ALAHRATSVW VIDEDQNLVG AVSFKGILKV FRSIAIARLK PETENLSTQE

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.