Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0506100-00 | |
| Os04t0382800-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27460.1 | Os02t0506100-00 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | Os04t0382800-00 | AT5G22310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032560_P001 | Maize | plastid | 77.66 | 58.4 |
| KXG38242 | Sorghum | plastid | 78.01 | 57.74 |
| TraesCS1B01G187200.1 | Wheat | plastid | 75.89 | 57.37 |
| TraesCS1A01G170000.1 | Wheat | plastid | 75.89 | 57.37 |
| TraesCS1D01G167600.1 | Wheat | plastid | 75.89 | 57.37 |
| Zm00001d013933_P001 | Maize | cytosol, plastid | 73.76 | 55.62 |
| HORVU1Hr1G044960.1 | Barley | mitochondrion, plastid | 74.82 | 43.69 |
| GSMUA_Achr2P18550_001 | Banana | cytosol | 56.38 | 40.77 |
| GSMUA_Achr11P... | Banana | cytosol | 52.84 | 38.5 |
| KRH27215 | Soybean | cytosol | 45.04 | 32.56 |
| VIT_19s0014g03090.t01 | Wine grape | extracellular, plastid, vacuole | 45.39 | 32.49 |
| KRH22128 | Soybean | plastid | 43.97 | 31.88 |
| VIT_00s0587g00030.t01 | Wine grape | cytosol | 43.26 | 31.77 |
| PGSC0003DMT400058761 | Potato | mitochondrion | 43.62 | 31.3 |
| Solyc02g078480.2.1 | Tomato | cytosol | 43.97 | 30.62 |
| PGSC0003DMT400064370 | Potato | cytosol, extracellular, plastid | 42.91 | 30.56 |
| PGSC0003DMT400057642 | Potato | cytosol | 43.62 | 30.52 |
| CDY29313 | Canola | cytosol, extracellular, plastid, vacuole | 41.49 | 30.31 |
| Solyc10g006920.2.1 | Tomato | cytosol, peroxisome, plastid | 42.55 | 30.3 |
| Bra026347.1-P | Field mustard | cytosol, extracellular, plastid, vacuole | 41.49 | 30.23 |
| CDX89247 | Canola | cytosol, extracellular, plastid, vacuole | 41.49 | 30.23 |
| Solyc10g009010.2.1 | Tomato | cytosol | 41.49 | 29.77 |
| CDY66674 | Canola | cytosol | 42.55 | 29.27 |
| PGSC0003DMT400033347 | Potato | cytosol | 40.78 | 28.82 |
| CDY53481 | Canola | cytosol | 40.78 | 28.47 |
| KRH21471 | Soybean | cytosol | 40.07 | 28.39 |
| AT4G27460.1 | Thale cress | plastid | 39.36 | 28.39 |
| KRH10848 | Soybean | cytosol | 38.3 | 28.35 |
| Solyc03g006470.2.1 | Tomato | cytosol | 39.72 | 28.0 |
| CDX96240 | Canola | cytosol | 39.36 | 27.68 |
| CDY28817 | Canola | cytosol | 37.59 | 27.6 |
| AT5G53750.1 | Thale cress | cytosol | 39.01 | 26.96 |
| Bra022672.1-P | Field mustard | cytosol | 32.98 | 25.0 |
| Bra029056.1-P | Field mustard | cytosol | 39.01 | 23.21 |
| Os04t0679600-01 | Rice | nucleus | 32.98 | 23.02 |
| Os01t0920000-01 | Rice | cytosol, plasma membrane | 23.4 | 17.19 |
| Os08t0529200-00 | Rice | plastid | 23.4 | 15.79 |
Protein Annotations
| EnsemblPlants:Os10t0499400-01 | EnsemblPlantsGene:Os10g0499400 | InterPro:CBS_dom | InterPro:IPR000644 | PANTHER:PTHR13780 | PANTHER:PTHR13780:SF39 |
| PFAM:PF00571 | PFscan:PS51371 | ProteinID:BAF26888.1 | ProteinID:BAT11513.1 | SEG:seg | SUPFAM:SSF54631 |
| UniParc:UPI0000DD9A22 | UniProt:Q0IWM7 | MapMan:35.1 | : | : | : |
Description
Cystathionine beta-synthase, core domain containing protein. (Os10t0499400-01)
Coordinates
chr10:+:19054980..19056045
Molecular Weight (calculated)
29465.0 Da
IEP (calculated)
4.850
GRAVY (calculated)
0.220
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: QCGVVLCSVL EALDAVLSGA QVLAVPLRSG GRRKQLGGGG GGGGGGDYCW LTQEDLVRYF LNSISLFSHV AGRSVSSLGL VRADDLLTVR PHEAALSAVP
101: LLRRAIATET AVAVVDDGGH LVGEISPALL ASCDETAAAA IATLSVADLM AYVDYFGAPP EHILRAVKAG LKSKGLDAML ELVENEAVSS FAFSSSSTSS
201: SSDDEAHGRA ARLRRPSSGS YGRRSTEEPV VCSPASSLVA VMMQALAHRA SYLWVLDEDD DCRLAGIVTF ADVLTVFREQ LQ
101: LLRRAIATET AVAVVDDGGH LVGEISPALL ASCDETAAAA IATLSVADLM AYVDYFGAPP EHILRAVKAG LKSKGLDAML ELVENEAVSS FAFSSSSTSS
201: SSDDEAHGRA ARLRRPSSGS YGRRSTEEPV VCSPASSLVA VMMQALAHRA SYLWVLDEDD DCRLAGIVTF ADVLTVFREQ LQ
001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
Arabidopsis Description
CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.