Factsheet for PGSC0003DMT400057642

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078480.2.1	Tomato	cytosol	94.79	94.32
PGSC0003DMT400033347	Potato	cytosol	66.75	67.42
PGSC0003DMT400058761	Potato	mitochondrion	63.77	65.39
VIT_00s0587g00030.t01	Wine grape	cytosol	57.82	60.68
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	48.14	48.99
KRH21471	Soybean	cytosol	47.89	48.49
KRH10848	Soybean	cytosol	44.91	47.51
GSMUA_AchrUn_...	Banana	cytosol, plastid	45.66	47.18
GSMUA_Achr3P14310_001	Banana	cytosol	42.18	45.21
GSMUA_Achr2P18550_001	Banana	cytosol	43.18	44.62
GSMUA_Achr11P...	Banana	cytosol	42.43	44.19
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	30.52	43.62
GSMUA_Achr1P17630_001	Banana	cytosol	41.94	43.33
TraesCS1B01G187200.1	Wheat	plastid	39.21	42.36
TraesCS1A01G170000.1	Wheat	plastid	39.21	42.36
Zm00001d032560_P001	Maize	plastid	38.96	41.87
TraesCS1D01G167600.1	Wheat	plastid	38.71	41.82
KXG38242	Sorghum	plastid	39.45	41.73
Zm00001d013933_P001	Maize	cytosol, plastid	37.72	40.64
TraesCS6D01G218300.1	Wheat	plastid	34.74	36.36
TraesCS6B01G264200.1	Wheat	plastid	34.24	35.57
HORVU6Hr1G060370.2	Barley	plastid	34.49	35.19
TraesCS6A01G235600.1	Wheat	plastid	33.99	35.04
Zm00001d017375_P001	Maize	plastid	35.48	34.54
EES05487	Sorghum	plastid	34.24	33.82
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	31.51	33.42
TraesCS2D01G599900.1	Wheat	cytosol	31.02	32.72
TraesCSU01G021400.1	Wheat	cytosol	30.77	32.46
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	37.97	31.68
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	17.62	31.56
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	27.54	26.3
Os04t0679600-01	Rice	nucleus	24.07	24.01

Protein Annotations

EnsemblPlants:PGSC0003DMT400057642	EnsemblPlantsGene:PGSC0003DMG400022383	EntrezGene:102599147	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF55	PFscan:PS51371	PGSC:PGSC0003DMG400022383	RefSeq:XP_006347062.1	SEG:seg	SUPFAM:SSF54631
UniParc:UPI000294E153	UniProt:M1C1F4	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022383]

Coordinates

chr2:-:34140410..34142727

Molecular Weight (calculated)

44056.8 Da

IEP (calculated)

4.886

GRAVY (calculated)

0.002

Length

403 amino acids

Sequence
(BLAST)

001: MAVSFLNREV SDLCLGKPAL KPIPAEATVS EALTLLKKSG ETHVSVWSCD HIRKVVEEGG GGDSVCRCIG KICMVDVICF LCKEENLADP SKALQTPVEQ
101: ILPKGNSIVR HLDPNSSLLE AIDYILEGAQ NLVIPIQNYK STPSRKKLLS KASFLTPTNH NGVEYCWLTQ EDIVRFLLNS IGVFSPMPTF SIESLNIINH
201: DMMTVSYHDP AISSLDAIIR AYIEQSSVAV VDEDNRLIGE ISPFTLAYCD ETVAAAIATL SAGDLMTYID YGGPPEDLIE LVKMRLQEKK LGAMVELIDE
301: EFSLSSSSSS ASSCSSDDES GSNKVTVLGR YSSARRSEAI TCYPWSSLVA VMIQALAHRA NSIWVMDADH NLIGVVTFKG ILEVFRSIAN AKRKPEKENT
401: SKQ

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.