Factsheet for VIT_00s0587g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
extracellular 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	60.42	58.88
Solyc02g078480.2.1	Tomato	cytosol	61.2	58.02
PGSC0003DMT400057642	Potato	cytosol	60.68	57.82
PGSC0003DMT400033347	Potato	cytosol	58.59	56.39
KRH21471	Soybean	cytosol	57.29	55.28
Solyc03g006470.2.1	Tomato	cytosol	57.03	54.75
PGSC0003DMT400058761	Potato	mitochondrion	55.21	53.94
KRH10848	Soybean	cytosol	53.39	53.81
Solyc10g009010.2.1	Tomato	cytosol	54.17	52.93
GSMUA_AchrUn_...	Banana	cytosol, plastid	50.52	49.74
GSMUA_Achr3P14310_001	Banana	cytosol	46.35	47.34
GSMUA_Achr1P17630_001	Banana	cytosol	47.14	46.41
GSMUA_Achr11P...	Banana	cytosol	45.05	44.7
GSMUA_Achr2P18550_001	Banana	cytosol	45.31	44.62
Zm00001d032560_P001	Maize	plastid	43.23	44.27
KXG38242	Sorghum	plastid	43.75	44.09
TraesCS1A01G170000.1	Wheat	plastid	42.45	43.7
TraesCS1B01G187200.1	Wheat	plastid	42.19	43.43
TraesCS1D01G167600.1	Wheat	plastid	42.19	43.43
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	31.77	43.26
Zm00001d013933_P001	Maize	cytosol, plastid	41.93	43.05
TraesCS6D01G218300.1	Wheat	plastid	37.76	37.66
EES05487	Sorghum	plastid	39.32	37.01
TraesCS6B01G264200.1	Wheat	plastid	36.98	36.6
TraesCS6A01G235600.1	Wheat	plastid	36.98	36.32
HORVU6Hr1G060370.2	Barley	plastid	36.98	35.95
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	34.9	35.26
Zm00001d017375_P001	Maize	plastid	37.5	34.78
TraesCSU01G021400.1	Wheat	cytosol	33.85	34.03
TraesCS2D01G599900.1	Wheat	cytosol	33.07	33.25
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	41.41	32.92
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	17.19	29.33
Os04t0679600-01	Rice	nucleus	24.74	23.51
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	25.78	23.18

Protein Annotations

ArrayExpress:VIT_00s0587g00030	EMBL:FN595548	EnsemblPlants:VIT_00s0587g00030.t01	EnsemblPlantsGene:VIT_00s0587g00030	EntrezGene:100267148	EntrezGene:LOC100267148
PANTHER:PTHR13780	PANTHER:PTHR13780:SF55	ProteinID:CCB50151	ProteinID:CCB50151.1	RefSeq:XP_002269338	RefSeq:XP_002269338.1
RefSeq:XP_010647229.1	SEG:seg	SUPFAM:SSF54631	TIGR:TC55947	unigene:Vvi.11130	UniParc:UPI00015CE379
UniProt:F6HD56	wikigene:100267148	wikigene:LOC100267148	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrUn:+:32423659..32425132

Molecular Weight (calculated)

41944.6 Da

IEP (calculated)

5.422

GRAVY (calculated)

0.119

Length

384 amino acids

Sequence
(BLAST)

001: MAVSLLGHEV SDLCLGKPAL RSLPVSATVA DALAALKRSG DAYLSVWSCD HTSKINKSHL EDCRCIGKIC MVDVVCFLCR EDNLSCPSDA LQSPLSLLLP
101: KVPGLVRHLK PNSRLLEAID LMLEGAQNIV IPIQSRTNPR KKLVPKPSFN STLHNGVEFC WLTQEDVVRF LLNSIGSFSP LPGLTIESLN IIDTENIPSV
201: YYHDPASSAL TAISQSLINQ TSVAVLDQEN KLVGEISPFT LACCDETVAA AIATLSAGDL MAYIDCGGPP EDLVQLVKAR LEERKLGAFL DLMDEEFSYS
301: SSSSSDEEFG FGRRGGSGKY SARMARRSEA IVCYPWSSLM AVMIQALAHR VSYVWVIEED WSLAGIVTFS GIFKVFRQHL RTQA

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.