Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G069400.8 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27460.1 | HORVU2Hr1G069400.8 | AT5G22310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G187200.1 | Wheat | plastid | 74.33 | 96.25 |
| TraesCS1A01G170000.1 | Wheat | plastid | 74.33 | 96.25 |
| TraesCS1D01G167600.1 | Wheat | plastid | 73.91 | 95.71 |
| Zm00001d032560_P001 | Maize | plastid | 59.63 | 76.8 |
| KXG38242 | Sorghum | plastid | 60.04 | 76.12 |
| Zm00001d013933_P001 | Maize | cytosol, plastid | 58.59 | 75.67 |
| Os10t0499400-01 | Rice | cytosol, endoplasmic reticulum | 43.69 | 74.82 |
| GSMUA_Achr2P18550_001 | Banana | cytosol | 43.69 | 54.1 |
| GSMUA_Achr11P... | Banana | cytosol | 42.03 | 52.45 |
| HORVU6Hr1G060370.2 | Barley | plastid | 35.2 | 43.04 |
| VIT_00s0587g00030.t01 | Wine grape | cytosol | 32.92 | 41.41 |
| VIT_19s0014g03090.t01 | Wine grape | extracellular, plastid, vacuole | 33.54 | 41.12 |
| KRH27215 | Soybean | cytosol | 32.92 | 40.77 |
| Solyc10g006920.2.1 | Tomato | cytosol, peroxisome, plastid | 33.33 | 40.66 |
| PGSC0003DMT400064370 | Potato | cytosol, extracellular, plastid | 33.33 | 40.66 |
| KRH22128 | Soybean | plastid | 32.71 | 40.62 |
| PGSC0003DMT400057642 | Potato | cytosol | 31.68 | 37.97 |
| Solyc02g078480.2.1 | Tomato | cytosol | 31.68 | 37.78 |
| Bra026347.1-P | Field mustard | cytosol, extracellular, plastid, vacuole | 30.02 | 37.47 |
| CDX89247 | Canola | cytosol, extracellular, plastid, vacuole | 30.02 | 37.47 |
| PGSC0003DMT400058761 | Potato | mitochondrion | 30.43 | 37.4 |
| HORVU2Hr1G118660.1 | Barley | cytosol, extracellular, mitochondrion, plastid | 17.39 | 37.33 |
| CDY29313 | Canola | cytosol, extracellular, plastid, vacuole | 29.81 | 37.31 |
| PGSC0003DMT400033347 | Potato | cytosol | 30.64 | 37.09 |
| CDY53481 | Canola | cytosol | 30.85 | 36.88 |
| AT5G53750.1 | Thale cress | cytosol | 31.06 | 36.76 |
| Solyc03g006470.2.1 | Tomato | cytosol | 30.43 | 36.75 |
| Solyc10g009010.2.1 | Tomato | cytosol | 29.81 | 36.64 |
| CDY66674 | Canola | cytosol | 31.06 | 36.59 |
| AT4G27460.1 | Thale cress | plastid | 29.61 | 36.57 |
| KRH10848 | Soybean | cytosol | 27.74 | 35.17 |
| CDY28817 | Canola | cytosol | 27.95 | 35.16 |
| KRH21471 | Soybean | cytosol | 28.78 | 34.92 |
| CDX96240 | Canola | cytosol | 28.78 | 34.66 |
| Bra022672.1-P | Field mustard | cytosol | 24.84 | 32.26 |
| Bra029056.1-P | Field mustard | cytosol | 28.99 | 29.54 |
| HORVU7Hr1G053840.1 | Barley | golgi | 16.36 | 22.01 |
| HORVU3Hr1G094090.2 | Barley | cytosol | 16.77 | 20.2 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G044960.1 | EnsemblPlantsGene:HORVU1Hr1G044960 | InterPro:CBS_dom | InterPro:IPR000644 | PANTHER:PTHR13780 | PANTHER:PTHR13780:SF39 |
| PFAM:PF00571 | PFscan:PS51371 | SEG:seg | SMART:SM00116 | SUPFAM:SSF54631 | UniParc:UPI000B467902 |
| UniProt:A0A287FD32 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:326523717..326526250
Molecular Weight (calculated)
50840.8 Da
IEP (calculated)
8.645
GRAVY (calculated)
-0.036
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPPHKPRLQ SNQPRAAPTP TTSQWAHRPP DPTLHRLPEA SKRVPPSPAA PKPIYAPSRP ASHGRKSQSR SLSSASTSRT VSSSRRKISP STPREGFVVE
101: TGTGPARECM AVSLLANDVS DLCIGKPAVR SLPLSAAAGD LAATVRKGPR AAAAACIAVG PARGAVVGRA GLADVLCLLC SSPDALARPA AALDRPVSAL
201: LPKDGAGEVR RVDPRSSVLE ALDEILSGAQ VLAVPIRPGG RKKQLGGVAG VTSDFCWLTQ EDLVRYFLNS ISLFYHVAAR SVSSLGLVRP DFLSVRPDEA
301: ALSAVPLIRR SIAAETAVAV VSADGHLVGE ISTAHLAACD ETAAAAIATL SAADLMAYID YFGSPPEHIL RAIKTGLKAK GLDAMLELME DETMTSFSLS
401: SSSSSDDDNG RPHLRRPSSG SFGRRSTEEP VVCSPASSLV AVMVQALAHR VSYLWVLDEE DDCRLAGIVT FADILRVFRE QLQ
101: TGTGPARECM AVSLLANDVS DLCIGKPAVR SLPLSAAAGD LAATVRKGPR AAAAACIAVG PARGAVVGRA GLADVLCLLC SSPDALARPA AALDRPVSAL
201: LPKDGAGEVR RVDPRSSVLE ALDEILSGAQ VLAVPIRPGG RKKQLGGVAG VTSDFCWLTQ EDLVRYFLNS ISLFYHVAAR SVSSLGLVRP DFLSVRPDEA
301: ALSAVPLIRR SIAAETAVAV VSADGHLVGE ISTAHLAACD ETAAAAIATL SAADLMAYID YFGSPPEHIL RAIKTGLKAK GLDAMLELME DETMTSFSLS
401: SSSSSDDDNG RPHLRRPSSG SFGRRSTEEP VVCSPASSLV AVMVQALAHR VSYLWVLDEE DDCRLAGIVT FADILRVFRE QLQ
001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
Arabidopsis Description
CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.