CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
extracellular 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66674	Canola	cytosol	87.62	86.34
CDY28817	Canola	cytosol	75.0	78.91
AT5G53750.1	Thale cress	cytosol	78.71	77.94
CDX96240	Canola	cytosol	75.99	76.56
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	61.63	64.51
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	61.63	64.34
KRH22128	Soybean	plastid	50.49	52.44
KRH27215	Soybean	cytosol	50.25	52.05
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	47.77	48.74
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	47.03	48.22
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	46.29	47.22
GSMUA_AchrUn_...	Banana	cytosol, plastid	43.81	45.38
GSMUA_Achr3P14310_001	Banana	cytosol	40.84	43.88
GSMUA_Achr1P17630_001	Banana	cytosol	40.84	42.31
GSMUA_Achr11P...	Banana	cytosol	40.1	41.86
GSMUA_Achr2P18550_001	Banana	cytosol	39.85	41.28
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	28.47	40.78
TraesCS1B01G187200.1	Wheat	plastid	37.38	40.48
TraesCS1D01G167600.1	Wheat	plastid	37.13	40.21
TraesCS1A01G170000.1	Wheat	plastid	37.13	40.21
Zm00001d013933_P001	Maize	cytosol, plastid	37.13	40.11
KXG38242	Sorghum	plastid	37.62	39.9
Zm00001d032560_P001	Maize	plastid	36.63	39.47
TraesCS6D01G218300.1	Wheat	plastid	36.63	38.44
TraesCS6B01G264200.1	Wheat	plastid	36.39	37.89
HORVU6Hr1G060370.2	Barley	plastid	36.14	36.96
TraesCS6A01G235600.1	Wheat	plastid	35.64	36.83
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	20.05	36.0
EES05487	Sorghum	plastid	35.4	35.05
Zm00001d017375_P001	Maize	plastid	35.89	35.02
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	32.43	34.47
TraesCS2D01G599900.1	Wheat	cytosol	31.93	33.77
TraesCSU01G021400.1	Wheat	cytosol	31.68	33.51
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	36.88	30.85
Os04t0679600-01	Rice	nucleus	23.02	23.02
CDY68980	Canola	cytosol	23.76	22.54
CDY39289	Canola	cytosol	23.76	22.43

Protein Annotations

EnsemblPlants:CDY53481	EnsemblPlantsGene:GSBRNA2T00010809001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF55	PFAM:PF00571	PFscan:PS51371	ProteinID:CDY53481	ProteinID:CDY53481.1	SEG:seg
SUPFAM:SSF54631	UniParc:UPI0004EDBDEA	UniProt:A0A078IUG8	MapMan:35.1	:	:

Description

BnaC03g14810DBnaC03g14810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUG8]

Coordinates

chrLK033207:+:43578..45734

Molecular Weight (calculated)

43049.5 Da

IEP (calculated)

4.997

GRAVY (calculated)

0.196

Length

404 amino acids

Sequence
(BLAST)

001: MALTLLSHEV SDLCIGKPPL RCLSAVTATV ADAIAALKSS DEPFLSVWSC NHDETNDDNK KCECECVGKI CMADVICYLT KHDNKALSLS SVLEASVSVL
101: HPKSRSIVVH VQSSCKLIEA IDLITGGAQD LIVPIQTKPN TKRRQTRNAV VSLTATTTTT IHKNSRQFCW ITQEDIIRFL LDSISVFSPL PSLSISDLGV
201: INSTHAILSV DYYSSASSAV TAISSAIADN ISVAVVDGEC DGEDPRAVLI GEISPMTLAC CDESAAAAVA TLSAGDLMTY IDGSGPPESL VRVVRNRLEE
301: KGLVGLISLV DSLSGSSGSS SSDEEAPAGR AKSYGRSVSS AARMARKSVA IVCNRRSSLM AVMIQAIAHR VSYVWVVDED GCLVGMVTFV DILKLFREFL
401: DDQN

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.