CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28817	Canola	cytosol	88.53	92.45
CDY66674	Canola	cytosol	77.81	76.1
CDY53481	Canola	cytosol	76.56	75.99
AT5G53750.1	Thale cress	cytosol	74.06	72.79
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	59.6	61.92
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	59.35	61.5
KRH22128	Soybean	plastid	47.63	49.1
KRH27215	Soybean	cytosol	47.13	48.46
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	46.63	47.22
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	46.13	46.72
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	44.89	45.69
GSMUA_AchrUn_...	Banana	cytosol, plastid	41.4	42.56
GSMUA_Achr3P14310_001	Banana	cytosol	39.4	42.02
GSMUA_Achr1P17630_001	Banana	cytosol	39.9	41.03
GSMUA_Achr2P18550_001	Banana	cytosol	39.4	40.51
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	27.68	39.36
GSMUA_Achr11P...	Banana	cytosol	37.66	39.02
TraesCS1B01G187200.1	Wheat	plastid	35.66	38.34
Zm00001d032560_P001	Maize	plastid	35.66	38.13
TraesCS1A01G170000.1	Wheat	plastid	35.41	38.07
TraesCS1D01G167600.1	Wheat	plastid	35.41	38.07
Zm00001d013933_P001	Maize	cytosol, plastid	35.41	37.97
KXG38242	Sorghum	plastid	35.91	37.8
TraesCS6D01G218300.1	Wheat	plastid	34.66	36.1
TraesCS6B01G264200.1	Wheat	plastid	34.16	35.31
HORVU6Hr1G060370.2	Barley	plastid	34.41	34.94
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	19.45	34.67
TraesCS6A01G235600.1	Wheat	plastid	33.67	34.53
TraesCSU01G021400.1	Wheat	cytosol	32.42	34.03
EES05487	Sorghum	plastid	34.41	33.82
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	31.92	33.68
TraesCS2D01G599900.1	Wheat	cytosol	31.17	32.72
Zm00001d017375_P001	Maize	plastid	33.67	32.61
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	34.66	28.78
Os04t0679600-01	Rice	nucleus	20.7	20.54
CDY68980	Canola	cytosol	20.95	19.72
CDY39289	Canola	cytosol	20.95	19.63

Protein Annotations

EnsemblPlants:CDX96240	EnsemblPlantsGene:GSBRNA2T00102357001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF55	PFAM:PF00571	PFscan:PS51371	ProteinID:CDX96240	ProteinID:CDX96240.1	SEG:seg
SUPFAM:SSF54631	UniParc:UPI0004EE9EB6	MapMan:35.1	:	:	:

Description

BnaC02g14110D

Coordinates

chrLK031893:+:1130383..1131688

Molecular Weight (calculated)

43358.4 Da

IEP (calculated)

6.598

GRAVY (calculated)

0.252

Length

401 amino acids

Sequence
(BLAST)

001: MAITLLSHEV SDLCIGKPPL RCLSAVTATV ADAIASLKSS DDPFLSVWSC NHDETNDDDD NKKCDCECLG KICMADVICY LSKFDNKVLS LSSAFNASVS
101: VLLHKCRSIV VHVQSSCKLA EAIDLITGGA QNLIVPIQTK RGQHKVLTRK NAVVSLTTTT TTHKNSRQFC WITQEDIIRF FLGSISVFSP LTSMSVSELG
201: VINSSRAFLA VDYYSSAASA VTAISLAIAN NISVLVVDGG CDVVEYPRIA LIGEILPMTL ECCDETAAAA VATLSAGELM TYIDGSGPLE SHVRVVRNRL
301: EEKGMVGLIS LVDSLSGSSS SDEESPTRRK KPYGRSVSRA ARMARKSVAI VCNRKSSLMA VMIQAIARRV SYVWVVDEDG CFIGMVTFVD ILKLFRVFLD
401: D

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.