Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0506100-00 | |
| Os04t0382800-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27460.1 | Os02t0506100-00 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | Os04t0382800-00 | AT5G22310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G118660.1 | Barley | cytosol, extracellular, mitochondrion, plastid | 22.52 | 40.44 |
| Os10t0499400-01 | Rice | cytosol, endoplasmic reticulum | 23.02 | 32.98 |
| TraesCS2A01G586700.1 | Wheat | cytosol, peroxisome, plastid | 29.95 | 31.84 |
| TraesCS2D01G599900.1 | Wheat | cytosol | 29.21 | 30.89 |
| TraesCSU01G021400.1 | Wheat | cytosol | 28.47 | 30.1 |
| GSMUA_Achr3P14310_001 | Banana | cytosol | 27.48 | 29.52 |
| GSMUA_Achr1P17630_001 | Banana | cytosol | 28.47 | 29.49 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 27.48 | 28.46 |
| KRH27215 | Soybean | cytosol | 24.75 | 25.64 |
| KRH10848 | Soybean | cytosol | 23.76 | 25.2 |
| KRH22128 | Soybean | plastid | 24.26 | 25.19 |
| VIT_00s0587g00030.t01 | Wine grape | cytosol | 23.51 | 24.74 |
| VIT_19s0014g03090.t01 | Wine grape | extracellular, plastid, vacuole | 24.01 | 24.62 |
| PGSC0003DMT400057642 | Potato | cytosol | 24.01 | 24.07 |
| Solyc02g078480.2.1 | Tomato | cytosol | 23.76 | 23.7 |
| KRH21471 | Soybean | cytosol | 23.27 | 23.62 |
| CDY53481 | Canola | cytosol | 23.02 | 23.02 |
| AT4G27460.1 | Thale cress | plastid | 22.03 | 22.76 |
| Solyc03g006470.2.1 | Tomato | cytosol | 22.52 | 22.75 |
| CDY66674 | Canola | cytosol | 23.02 | 22.68 |
| Solyc10g009010.2.1 | Tomato | cytosol | 21.78 | 22.39 |
| PGSC0003DMT400058761 | Potato | mitochondrion | 21.53 | 22.14 |
| PGSC0003DMT400033347 | Potato | cytosol | 21.78 | 22.06 |
| Solyc10g006920.2.1 | Tomato | cytosol, peroxisome, plastid | 21.29 | 21.72 |
| PGSC0003DMT400064370 | Potato | cytosol, extracellular, plastid | 21.29 | 21.72 |
| CDY29313 | Canola | cytosol, extracellular, plastid, vacuole | 20.54 | 21.5 |
| CDX89247 | Canola | cytosol, extracellular, plastid, vacuole | 20.54 | 21.45 |
| Bra026347.1-P | Field mustard | cytosol, extracellular, plastid, vacuole | 20.54 | 21.45 |
| CDY28817 | Canola | cytosol | 20.05 | 21.09 |
| CDX96240 | Canola | cytosol | 20.54 | 20.7 |
| AT5G53750.1 | Thale cress | cytosol | 20.79 | 20.59 |
| Bra029056.1-P | Field mustard | cytosol | 22.28 | 18.99 |
| Bra022672.1-P | Field mustard | cytosol | 16.58 | 18.01 |
| Os01t0920000-01 | Rice | cytosol, plasma membrane | 16.34 | 17.19 |
| Os08t0529200-00 | Rice | plastid | 15.84 | 15.31 |
Protein Annotations
| EnsemblPlants:Os04t0679600-01 | EnsemblPlantsGene:Os04g0679600 | Gene3D:3.10.580.10 | InterPro:CBS_dom | InterPro:IPR000644 | PANTHER:PTHR13780 |
| PANTHER:PTHR13780:SF39 | PFscan:PS51371 | ProteinID:BAS91658.1 | SEG:seg | SUPFAM:SSF54631 | UniParc:UPI000393B028 |
| UniProt:A0A0P0WGE7 | MapMan:35.2 | : | : | : | : |
Description
cystathionine b-synthase domain containing protein OsCBSX12, CBS domain containing protein OsCBSX12Similar to H0801D08.17 protein. (Os04t0679600-01)
Coordinates
chr4:-:34706575..34707975
Molecular Weight (calculated)
42828.2 Da
IEP (calculated)
12.102
GRAVY (calculated)
-0.339
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: CTCVSLHGAA ISRCIGSLHR QAAGEVAAAV LHRRRCHRRD RGRRRPGSGR CRRRVGRDEG GSGWQGVHGR RAPLPLRRRR RGGQPGFPGR RASGHALRPP
101: RRRRAARPPH RAPRECGGSG GRLLGRRALP RRADPGAVAA RGGGGGDVHV LAHGGGRRAL LRRLHRPLRP DGLALRFLSS GISPRGHAPV AAGDRALSAV
201: PLLSAALATH SSVAVITGAG IAPRLAGEVS PSALCSCDVS VAAAIAALSA GDLTAFLHRS DLRCRRNLPG MVDLLYAGDP SSWPPSPSSS SSSSSSSSSL
301: SSFSSSSDDE AEDGYKHYAP APCARRDNNR QIIACHPGSS LVAVMAQAVA HRVTQVWVVD FDDGELVGVV RFLDVLWVLR EHLNQPPLIY PSNFSSINPS
401: TKLR
101: RRRRAARPPH RAPRECGGSG GRLLGRRALP RRADPGAVAA RGGGGGDVHV LAHGGGRRAL LRRLHRPLRP DGLALRFLSS GISPRGHAPV AAGDRALSAV
201: PLLSAALATH SSVAVITGAG IAPRLAGEVS PSALCSCDVS VAAAIAALSA GDLTAFLHRS DLRCRRNLPG MVDLLYAGDP SSWPPSPSSS SSSSSSSSSL
301: SSFSSSSDDE AEDGYKHYAP APCARRDNNR QIIACHPGSS LVAVMAQAVA HRVTQVWVVD FDDGELVGVV RFLDVLWVLR EHLNQPPLIY PSNFSSINPS
401: TKLR
001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
Arabidopsis Description
CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.