Factsheet for AT4G27460.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

endoplasmic reticulum 1
golgi 1
extracellular 2
plastid 5
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	73.91	74.68
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	73.91	74.68
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	73.4	74.35
AT5G53750.1	Thale cress	cytosol	65.73	62.99
KRH22128	Soybean	plastid	50.9	51.16
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	50.38	50.0
KRH27215	Soybean	cytosol	49.87	50.0
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	49.36	48.74
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	47.57	46.97
GSMUA_AchrUn_...	Banana	cytosol, plastid	44.25	44.36
GSMUA_Achr3P14310_001	Banana	cytosol	41.43	43.09
GSMUA_Achr1P17630_001	Banana	cytosol	40.92	41.03
GSMUA_Achr2P18550_001	Banana	cytosol	40.66	40.77
GSMUA_Achr11P...	Banana	cytosol	40.15	40.57
Zm00001d013933_P001	Maize	cytosol, plastid	38.11	39.84
Zm00001d032560_P001	Maize	plastid	38.11	39.73
KXG38242	Sorghum	plastid	38.62	39.63
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	28.39	39.36
TraesCS1A01G170000.1	Wheat	plastid	37.34	39.14
TraesCS1B01G187200.1	Wheat	plastid	37.08	38.87
TraesCS1D01G167600.1	Wheat	plastid	37.08	38.87
TraesCS6D01G218300.1	Wheat	plastid	35.04	35.58
HORVU6Hr1G060370.2	Barley	plastid	35.81	35.44
TraesCS6B01G264200.1	Wheat	plastid	34.78	35.05
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	19.69	34.22
TraesCS6A01G235600.1	Wheat	plastid	34.02	34.02
EES05487	Sorghum	plastid	35.29	33.82
TraesCS2D01G599900.1	Wheat	cytosol	32.48	33.25
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	31.97	32.89
TraesCSU01G021400.1	Wheat	cytosol	31.71	32.46
Zm00001d017375_P001	Maize	plastid	34.02	32.13
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	36.57	29.61
Os04t0679600-01	Rice	nucleus	22.76	22.03
AT1G65320.1	Thale cress	cytosol	23.53	21.65

Protein Annotations

Gene3D:3.10.580.10	MapMan:35.1	EntrezGene:828855	UniProt:A0A178V3C0	ProteinID:AEE85345.1	ArrayExpress:AT4G27460
EnsemblPlantsGene:AT4G27460	RefSeq:AT4G27460	TAIR:AT4G27460	RefSeq:AT4G27460-TAIR-G	EnsemblPlants:AT4G27460.1	TAIR:AT4G27460.1
EMBL:BT002893	EMBL:BT020485	EMBL:BT026427	ProteinID:CAB43878.1	ProteinID:CAB81396.1	InterPro:CBS_dom
GO:GO:0008150	InterPro:IPR000644	RefSeq:NP_194476.2	ProteinID:OAP00231.1	PFAM:PF00571	PO:PO:0000293
PO:PO:0007611	PO:PO:0009005	PO:PO:0009046	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF55
UniProt:Q84WQ5	SUPFAM:SSF54631	UniParc:UPI0000196E04	SEG:seg	:	:

Description

CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]

Coordinates

chr4:+:13732832..13734531

Molecular Weight (calculated)

41963.1 Da

IEP (calculated)

5.040

GRAVY (calculated)

0.161

Length

391 amino acids

Sequence
(BLAST)

001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.