Factsheet for AT1G65320.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

endoplasmic reticulum 2
golgi 2
extracellular 2
cytosol 2
vacuole 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, extracellular, golgi, plastid
BaCelLo:	endoplasmic reticulum, extracellular, golgi
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68980	Canola	cytosol	83.06	82.86
CDY39289	Canola	cytosol	82.82	82.24
Bra004113.1-P	Field mustard	plastid	78.82	77.19
Solyc04g056630.2.1	Tomato	cytosol	66.12	66.9
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	65.41	65.88
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	66.12	65.81
KRH00904	Soybean	cytosol	64.24	64.24
KRH40331	Soybean	cytosol, nucleus	64.24	64.24
GSMUA_Achr10P...	Banana	cytosol	53.41	59.89
Os01t0920000-01	Rice	cytosol, plasma membrane	50.59	55.99
TraesCS3B01G463800.1	Wheat	cytosol	49.88	53.27
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	53.65	52.9
Zm00001d042343_P001	Maize	extracellular	50.59	52.83
EES04112	Sorghum	cytosol	50.82	52.81
TraesCS3D01G422700.1	Wheat	cytosol	49.41	52.76
TraesCS3A01G427100.1	Wheat	cytosol	48.94	52.26
HORVU3Hr1G094090.2	Barley	cytosol	48.71	51.62
GSMUA_AchrUn_...	Banana	cytosol	46.35	44.57
TraesCS3B01G463400.1	Wheat	plastid	44.24	40.34
AT4G27460.1	Thale cress	plastid	21.65	23.53
AT5G53750.1	Thale cress	cytosol	21.65	22.55

Protein Annotations

Gene3D:3.10.580.10	MapMan:35.1	EntrezGene:842840	ProteinID:AAC27143.1	ProteinID:AEE34358.1	EMBL:AK117112
ArrayExpress:AT1G65320	EnsemblPlantsGene:AT1G65320	RefSeq:AT1G65320	TAIR:AT1G65320	RefSeq:AT1G65320-TAIR-G	EnsemblPlants:AT1G65320.1
TAIR:AT1G65320.1	Unigene:At.35899	InterPro:CBS_dom	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000644
RefSeq:NP_176711.1	PFAM:PF00571	PO:PO:0000005	PO:PO:0000293	PFscan:PS51371	PANTHER:PTHR13780
PANTHER:PTHR13780:SF46	UniProt:Q8GZA4	SUPFAM:SSF54631	UniParc:UPI00000ADD0E	SEG:seg	:

Description

CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]

Coordinates

chr1:-:24259880..24262998

Molecular Weight (calculated)

46557.6 Da

IEP (calculated)

7.274

GRAVY (calculated)

-0.134

Length

425 amino acids

Sequence
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.