Factsheet for Zm00001d042343_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04112	Sorghum	cytosol	92.38	91.93
Os01t0920000-01	Rice	cytosol, plasma membrane	73.22	77.6
TraesCS3B01G463800.1	Wheat	cytosol	75.43	77.14
TraesCS3D01G422700.1	Wheat	cytosol	75.18	76.88
TraesCS3A01G427100.1	Wheat	cytosol	74.69	76.38
HORVU3Hr1G094090.2	Barley	cytosol	73.96	75.06
GSMUA_Achr10P...	Banana	cytosol	54.79	58.84
TraesCS3B01G463400.1	Wheat	plastid	62.16	54.29
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	56.51	53.36
CDY68980	Canola	cytosol	54.79	52.35
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	54.05	51.52
CDY39289	Canola	cytosol	54.05	51.4
KRH40331	Soybean	cytosol, nucleus	53.56	51.29
Solyc04g056630.2.1	Tomato	cytosol	52.33	50.71
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	52.58	50.71
AT1G65320.1	Thale cress	cytosol	52.83	50.59
KRH00904	Soybean	cytosol	52.58	50.35
Bra004113.1-P	Field mustard	plastid	53.32	50.0
GSMUA_AchrUn_...	Banana	cytosol	53.56	49.32
Zm00001d031600_P001	Maize	plastid	39.8	41.01
Zm00001d032560_P001	Maize	plastid	20.15	21.87
Zm00001d017375_P001	Maize	plastid	21.87	21.5
Zm00001d013933_P001	Maize	cytosol, plastid	18.67	20.32

Protein Annotations

EMBL:BT034055	EMBL:BT034924	EMBL:BT063486	EnsemblPlants:Zm00001d042343_P001	EnsemblPlants:Zm00001d042343_T001	EnsemblPlantsGene:Zm00001d042343
EntrezGene:100191828	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF46
PFAM:PF00571	PFscan:PS51371	ProteinID:ONM35089.1	SEG:seg	SUPFAM:SSF54631	UniParc:UPI00017B6292
UniProt:B4FAB7	MapMan:35.1	:	:	:	:

Description

CBS domain-containing protein CBSX6

Coordinates

chr3:+:162172639..162177092

Molecular Weight (calculated)

43454.9 Da

IEP (calculated)

7.471

GRAVY (calculated)

-0.036

Length

407 amino acids

Sequence
(BLAST)

001: MAAVFFHHVV GDLTVGKPEV AELHDTDTLD DAARAIAASP EGAVPVWRPR AAPDDPPSGA RFIGMISALD IAAFVASAGV GDRSMRAVVG EVVQPNPALL
101: REIDPGTRLI DALELMRHGV KRFLVRKSGS WKGITKRFSV LYNGKWLKNM ESTSPSAASS SSTQLSPRSG SAEKFCCLSR EDVLRFLIGC LGALAPIPLT
201: QISSLGAINP QYSYVEASAP AMEAIQKIPQ DPCAVAVVET MPDGTRSILG DISTYKLWKC DYVSAAWALA NLSAGQFVIG ADENGSTPIS VFPEPPISPS
301: SPVEEISPGR SPRAKKFSSR SIGFLNNTQM SAWRTRSMYH RGRSTPLMCK TTSTLAAVMA QMLSHRATHV WVTDAESEED GVVVGVVGYT EIFNAATRST
401: CPSPTAS

Best Arabidopsis Sequence Match ( AT1G65320.1 )
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS

Arabidopsis Description

CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.