Factsheet for PGSC0003DMT400027312

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	plastid
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g056630.2.1	Tomato	cytosol	88.39	88.81
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	68.72	67.92
AT1G65320.1	Thale cress	cytosol	65.88	65.41
KRH00904	Soybean	cytosol	63.98	63.53
KRH40331	Soybean	cytosol, nucleus	63.74	63.29
CDY68980	Canola	cytosol	62.56	61.97
CDY39289	Canola	cytosol	62.8	61.92
Bra004113.1-P	Field mustard	plastid	63.03	61.29
GSMUA_Achr10P...	Banana	cytosol	54.27	60.42
Os01t0920000-01	Rice	cytosol, plasma membrane	50.71	55.73
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	55.69	54.52
TraesCS3B01G463800.1	Wheat	cytosol	50.95	54.02
TraesCS3D01G422700.1	Wheat	cytosol	50.95	54.02
EES04112	Sorghum	cytosol	51.9	53.55
HORVU3Hr1G094090.2	Barley	cytosol	50.47	53.12
TraesCS3A01G427100.1	Wheat	cytosol	50.0	53.02
Zm00001d042343_P001	Maize	extracellular	50.71	52.58
GSMUA_AchrUn_...	Banana	cytosol	47.63	45.48
TraesCS3B01G463400.1	Wheat	plastid	45.5	41.2
PGSC0003DMT400057642	Potato	cytosol	26.3	27.54
PGSC0003DMT400033347	Potato	cytosol	25.59	27.07
PGSC0003DMT400058761	Potato	mitochondrion	25.12	26.97
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	22.51	23.99

Protein Annotations

EntrezGene:102604968	Gene3D:3.10.580.10	MapMan:35.1	InterPro:CBS_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	InterPro:IPR000644
UniProt:M1APH7	PFAM:PF00571	EnsemblPlantsGene:PGSC0003DMG400010533	PGSC:PGSC0003DMG400010533	EnsemblPlants:PGSC0003DMT400027312	PFscan:PS51371
PANTHER:PTHR13780	PANTHER:PTHR13780:SF46	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI00029588E7	RefSeq:XP_006350399.1
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010533]

Coordinates

chr4:+:49468593..49475358

Molecular Weight (calculated)

45895.4 Da

IEP (calculated)

7.934

GRAVY (calculated)

-0.018

Length

422 amino acids

Sequence
(BLAST)

001: MASVFLYHVV GDLTVGKPEL VEFTETQTVE AAIRAIGEST ECGIPVWKTR SQKGLIENAE MRRKRFVGIL NSLDIVAFLA REECLADQEK AMKTPVSEVV
101: LPDNSLLKEL DPATRLIDAL EMMKQGVKRL LVPKSVVWRG MSKRFSILYN GKWLKNIDTS NPAANANRPS TSSPVPIRDK FCCLSREDII RFIIGCLGAL
201: APIPLSSIYS LGIINPNYCS IEASRPAIDA TQKLPSDPPA VAVIDPMADD YNKIIGEISA TKLWKCDYLA AAWALANFSA GQFVMGVEDN ISSSSLPDFA
301: VNPMVTNANT ANSRGGIVRP KKFSSRSIGF VSNPTNSSLS VSRSMYRGRS APLTCKETSS LAAVMAQMLS HRATHVWVTD AENEDHLVGV VGYADILAAV
401: TRPLPTTNPE THSCSSMLIN QA

Best Arabidopsis Sequence Match ( AT1G65320.1 )
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS

Arabidopsis Description

CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.