Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G463800.1 | Wheat | cytosol | 76.3 | 73.62 |
| Zm00001d042343_P001 | Maize | extracellular | 77.6 | 73.22 |
| TraesCS3A01G427100.1 | Wheat | cytosol | 75.52 | 72.86 |
| TraesCS3D01G422700.1 | Wheat | cytosol | 75.26 | 72.61 |
| HORVU3Hr1G094090.2 | Barley | cytosol | 75.26 | 72.07 |
| EES04112 | Sorghum | cytosol | 76.56 | 71.88 |
| GSMUA_Achr10P... | Banana | cytosol | 60.42 | 61.21 |
| GSMUA_Achr7P22870_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 62.76 | 55.92 |
| TraesCS3B01G463400.1 | Wheat | plastid | 65.89 | 54.29 |
| CDY68980 | Canola | cytosol | 57.81 | 52.11 |
| CDY39289 | Canola | cytosol | 57.29 | 51.4 |
| Solyc04g056630.2.1 | Tomato | cytosol | 55.99 | 51.19 |
| KRH40331 | Soybean | cytosol, nucleus | 56.51 | 51.06 |
| VIT_04s0023g00310.t01 | Wine grape | cytosol, plastid, vacuole | 56.77 | 51.05 |
| PGSC0003DMT400027312 | Potato | cytosol, mitochondrion, plastid | 55.73 | 50.71 |
| AT1G65320.1 | Thale cress | cytosol | 55.99 | 50.59 |
| KRH00904 | Soybean | cytosol | 54.69 | 49.41 |
| Bra004113.1-P | Field mustard | plastid | 55.47 | 49.08 |
| GSMUA_AchrUn_... | Banana | cytosol | 52.86 | 45.93 |
| Os08t0529200-00 | Rice | plastid | 40.62 | 37.32 |
| Os10t0499400-01 | Rice | cytosol, endoplasmic reticulum | 17.19 | 23.4 |
| Os04t0679600-01 | Rice | nucleus | 17.19 | 16.34 |
Protein Annotations
| EnsemblPlants:Os01t0920000-01 | EnsemblPlantsGene:Os01g0920000 | Gene3D:3.10.580.10 | InterPro:CBS_dom | InterPro:IPR000644 | PANTHER:PTHR13780 |
| PANTHER:PTHR13780:SF46 | PFAM:PF00571 | PFscan:PS51371 | ProteinID:BAD87634.1 | ProteinID:BAD88358.1 | ProteinID:BAF07130.2 |
| ProteinID:BAS75924.1 | SEG:seg | SUPFAM:SSF54631 | UniParc:UPI00004C2A36 | UniProt:Q5JJJ9 | MapMan:35.1 |
Description
cystathionine b-synthase domain containing protein OsCBSCBS5, CBS domain containing protein OsCBSCBS5Cystathionine beta-synthase, core domain containing protein. (Os01t0920000-01);Cystathionine beta-synthase, core domain containing protein. (Os01t0920000-02)
Coordinates
chr1:-:40153314..40157441
Molecular Weight (calculated)
40937.2 Da
IEP (calculated)
7.861
GRAVY (calculated)
0.068
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVFFHHVV GDLTVGKPEV VELHDTDTPR AAPDEPPSGA RFLGMISALD IATFVAASGV GDRAMAAVVG EVVQPNPGLL REVDPGTRLI DALDLMKQGV
101: KRFLVRKNGA WRGISKRFSV LYNGKWLKNM EATSPTSASS SRELSSSTSS TYKFCCLSRE DILRFLIGCL GALAPIPLSP ISSLGAINPH YCHVDASVPA
201: MEAIQKVPPD PSAVAVVETT PDGTRKILGD ISAYKLWKCD YVAAAWALIN LSAGQFVIGA DDNESTPISA IPVPPISSSL VEEIGPGRSP RAKKFSSRSI
301: GFLNSQAHQM AFGRMRSMYR GRSAPLMCKS TSSLAAVMAQ MLSHRATHVW VTDAESEEDG VLVGVVGYTD IFNAVTKSVY PAAS
101: KRFLVRKNGA WRGISKRFSV LYNGKWLKNM EATSPTSASS SRELSSSTSS TYKFCCLSRE DILRFLIGCL GALAPIPLSP ISSLGAINPH YCHVDASVPA
201: MEAIQKVPPD PSAVAVVETT PDGTRKILGD ISAYKLWKCD YVAAAWALIN LSAGQFVIGA DDNESTPISA IPVPPISSSL VEEIGPGRSP RAKKFSSRSI
301: GFLNSQAHQM AFGRMRSMYR GRSAPLMCKS TSSLAAVMAQ MLSHRATHVW VTDAESEEDG VLVGVVGYTD IFNAVTKSVY PAAS
001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS
Arabidopsis Description
CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.